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Nils
Arrigo
nils.arrigo@gmail.com
Journal articles
in press
N Arrigo
,
M de La Harpe
,
G Litsios
,
J Zozomová-Lihová
,
S Španiel
,
K Marhold
,
M S Barker
,
N Alvarez
(in press)
Is hybridization driving the evolution of climatic niche in
Alyssum montanum
?
American Journal of Botany.
2016
DOI
N Arrigo
,
D Frey
,
G Granereau
,
A Sarr
,
F Felber
,
G Kozlowski
(2016)
Parallel declines in species and genetic diversity driven by anthropogenic disturbance: a multi-species approach in a French Atlantic dune system. Evolutionary Applications .
Evolutionary Applications
9:
3.
479-488.
DOI
C Geiser
,
T Mandáková
,
N Arrigo
,
M A Lysak
,
C Parisod
(2016)
Repeated whole-genome duplication, karyotype reshuffling, and biased retention of stress-responding genes in buckler mustard.
Plant Cell
28:
1.
17-27.
2015
DOI
M S Barker
,
N Arrigo
,
A E Baniaga
,
Z Li
,
D A Levin
(2015)
On the relative abundance of autopolyploids and allopolyploids.
New Phytologist.
DOI
Ruth E Bone
,
J Andrew C Smith
,
Nils Arrigo
,
Sven Buerki
(2015)
A macro-ecological perspective on crassulacean acid metabolism (CAM) photosynthesis evolution in Afro-Madagascan drylands: Eulophiinae orchids as a case study
New Phytologist.
DOI
Malou Delplancke
,
Mariana Yazbek
,
Nils Arrigo
,
Anahí Espíndola
,
Hélène Joly
,
Nadir Alvarez
(2015)
Combining conservative and variable markers to infer the evolutionary history of
Prunus
subgen.
Amygdalus
s.l. under domestication
Genetic Resources and Crop Evolution.
Itay Mayrose
,
Shing H Zhan
,
Carl J Rothfels
,
Nils Arrigo
,
Michael S Barker
,
Loren H Rieseberg
,
Sarah P Otto
(2015)
Methods for studying polyploid diversification and the dead end hypothesis: a reply to Soltis
et al.
(2014)
New Phytologist.
DOI
Alicia Mastretta-Yanes
,
Sergio Zamudio
,
Tove H Jorgensen
,
Nils Arrigo
,
Nadir Alvarez
,
Daniel Piñero Brent C Emerson
(2015)
Gene duplication, population genomics and species-level differentiation within a tropical mountain shrub.
Genome Biology and Evolution
9:
9.
2014
Yann Triponez*
,
Nils Arrigo*
,
Anahí Espíndola
,
Nadir Alvarez
(2014)
Decoupled post-glacial history in mutualistic plant-insect interactions: insights from the yellow loosestrife (
Lysimachia vulgaris
) and its associated oil-collecting bees (
Macropis europaea
and
M. fulvipes
)
Journal of Biogeography.
DOI
Mila Pajkovic*
,
Sylvain Lappe*
,
Rachel Barman*
,
Christian Parisod
,
Samuel Neuenschwander
,
Jerome Goudet
,
Nadir Alvarez
,
Roberto Guadagnuolo
,
Francois Felber
,
Nils Arrigo
(2014)
Wheat alleles introgress into selfing wild relatives: empirical estimates from Approximate Bayesian Computation in
Aegilops triuncialis
.
Molecular Ecology
23:
20.
5089-5101
Oct.
DOI
Alicia Mastretta-Yanes
,
Nils Arrigo
,
Nadir Alvarez
,
Tove H Jorgensen
,
Daniel Piñero
,
Brent C Emerson
(2014)
RAD sequencing, genotyping error estimation and de novo assembly optimization for population genetic inference
Molecular Ecology Resources.
2013
DOI
Nils Arrigo
,
James Therrien
,
Cajsa Lisa Anderson
,
Michael D Windham
,
Christopher H Haufler
,
Michael S Barker
(2013)
A total evidence approach to understanding phylogenetic relationships and ecological diversity in
Selaginella
subg.
Tetragonostachys
American Journal of Botany
100:
8.
DOI
Guillaume Besnard
,
Bouchaib Khadari
,
Miguel Navascués
,
Mario Fernández-Mazuecos
,
Ahmed El Bakkali
,
Nils Arrigo
,
Djamel Baali-Cherif
,
Virginie Brunini-Bronzini de Caraffa
,
Sylvain Santoni
,
Pablo Vargas
,
Vincent Savolainen
(2013)
The complex history of the olive tree: from Late Quaternary diversification of Mediterranean lineages to primary domestication in the northern Levant
Proceedings of the Royal Society B Biological Sciences
280:
1756.
2012-2833.
DOI
Yann Triponez*
,
Nils Arrigo*
,
Loïc Pelissier*
,
Bertrand Schatz
,
Nadir Alvarez
(2013)
Morphological, ecological and genetic aspects associated with endemism in the Fly Orchid group
Molecular Ecology
22:
5.
1431-1446.
DOI
Christian Parisod
,
Celine Definod
,
Anouck Sarr
,
Nils Arrigo
,
François Felber
(2013)
Genome-specific introgression between wheat and its wild relative
Aegilops triuncialis
Journal of Evolutionary Biology
26:
1.
223-228.
2012
DOI
Malou Delplancke
,
Nadir Alvarez
,
Laure Benoit
,
Anahi Espíndola
,
Helene I Joly
,
Samuel Neuenschwander
,
Nils Arrigo
(2012)
Evolutionary history of almond tree domestication in the Mediterranean basin
Molecular Ecology.
DOI
Markus Peintinger
,
Nils Arrigo
,
Sabine Brodbeck
,
Andreas Koller
,
Martina Imsand
,
Rolf Holderegger
(2012)
Genetic differentiation of the endemic grass species Deschampsia littoralis at pre-Alpine lakes
Alpine Botany.
DOI
Nils Arrigo
,
Loren P Albert
,
Pascal G Mickelson
,
Michael S Barker
(2012)
Quantitative Visualization of Biological Data in Google Earth Using R2G2, an R CRAN package
Molecular Ecology Resources
12:
6.
1177-1179.
DOI
Nils Arrigo
,
Michael S Barker
(2012)
Rarely successful polyploids and their legacy in plant genomes
Current Opinion in Plant Biology
15:
2.
140-146.
DOI
Matthias Borer*
,
Nils Arrigo*
,
Sven Buerki
,
Russell Naisbit
,
Nadir Alvarez
(2012)
Climate oscillations and species interactions: large scale congruence but regional differences in phylogeographic structures of the alpine plant
Peucedanum ostruthium
and its specific phytophagous insect
Oreina gloriosa
Journal of Biogeography
39:
8.
1487-1498.
2011
DOI
Malou Delplancke
,
Nadir Alvarez
,
Anahi Espíndola
,
Helene Joly
,
Laure Benoit
,
Elise Brouck
,
Nils Arrigo
(2011)
Gene flow among wild and domesticated almond species, insights from chloroplast and nuclear markers.
Evolutionary Applications.
DOI
Matthias Borer*
,
Tom van Noort*
,
Nils Arrigo
,
Sven Buerki
,
Nadir Alvarez
(2011)
Does a shift in host plants trigger speciation in the Alpine leaf beetle
Oreina speciosissima
(Coleoptera, Chrysomelidae)?
BMC Evolutionary Biology.
DOI
Celia Bueno
,
Kathreen E Ruckstuhl
,
Nils Arrigo
,
Angela N Aivaz
,
Peter Neuhaus
(2011)
Impacts of cattle grazing on small rodent communities: An experimental case study
Canadian Journal of Zoology
90:
1.
22-30.
DOI
Nils Arrigo
,
Roberto Guadagnuolo
,
Sylvain Lappe
,
Sophie Pasche
,
Christian Parisod
,
François Felber
(2011)
Gene flow between wheat and wild relatives: empirical evidence from
Aegilops geniculata
,
Ae. neglecta
and
Ae. triuncialis
Evolutionary Applications
4:
5.
685-695.
DOI
PMID
Nils Arrigo
,
Sven Buerki
,
Anouk Sarr
,
Roberto Guadagnuolo
,
Gregor Kozlowski
(2011)
Phylogenetics and phylogeography of the monocot genus
Baldellia
(Alismataceae): Mediterranean refugia, suture zones and implications for conservation.
Molecular Phylogenetics and Evolution
58:
1.
33-42
Jan.
2010
DOI
Sven Buerki
,
Felix Forest
,
Nadir Alvarez
,
Johann Nylander
,
Nils Arrigo
,
Isabel Sanmartín
(2010)
An evaluation of new parsimony-based versus parametric inference methods in biogeography : a case study using the globally distributed plant family Sapindaceae.
Journal of Biogeography.
DOI
PMID
Nils Arrigo
,
François Felber
,
Christian Parisod
,
Sven Buerki
,
Nadir Alvarez
,
Jacques David
,
Roberto Guadagnuolo
(2010)
Origin and expansion of the allotetraploid
Aegilops geniculata
, a wild relative of wheat.
New Phytologist
187:
4.
1170-1180
Sep.
2009
DOI
PMID
Julien Burnier
,
Sven Buerki
,
Nils Arrigo
,
Philippe Küpfer
,
Nadir Alvarez
(2009)
Genetic structure and evolution of Alpine polyploid complexes:
Ranunculus kuepferi
(Ranunculaceae) as a case study.
Molecular Ecology
18:
17.
3730-3744
Sep.
DOI
PMID
Nils Arrigo
,
Jarek W Tuszynski
,
Dorothee Ehrich
,
Tommy Gerdes
,
Nadir Alvarez
(2009)
Evaluating the impact of scoring parameters on the structure of intra-specific genetic variation using RawGeno, an R package for automating AFLP scoring.
BMC Bioinformatics
10:
01.
2008
DOI
Nadir Alvarez
,
Nils Arrigo
,
IntraBiodiv Consortium
(2008)
SIMIL : an R (CRAN) scripts collection for computing genetic structure similarities based on STRUCTURE 2 outputs.
Molecular Ecology Resources
8:
4.
757-762.
2007
Book chapters
2012
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All Tags:
Agricultural
,
Algorithms
,
Amplified Fragment Length Polymorphism Analysis
(2),
Base Sequence
,
Chloroplast
,
Computational Biology
,
Crops
,
DNA
(4),
Ecology
(2),
Europe
(2),
Evolution
,
Gene Flow
,
Genetic
(3),
Genetic Variation
(3),
Genetically Modified
,
Genetics
(2),
Geography
,
Heterozygote
,
Hybridization
,
Models
,
Molecular
,
Molecular Sequence Data
,
Phylogeny
,
Plant
(2),
Plants
,
Poaceae
,
Polyploidy
,
Population
(2),
Ranunculus
,
Recombination
,
Risk Assessment
,
Sequence Alignment
,
Sequence Analysis
,
Software
,
Transgenes
,
Vitis
Authors
<
,
A Aivaz
,
L Albert
,
N Alvarez
(17),
C Anderson
,
C Arnold
,
< Arrigo*
(3),
< Arrigo
(28),
A Bakkali
,
A Baniaga
,
M Barker
(6),
R Barman*
,
L Benoit
(2),
G Besnard
,
R Bone
,
M Borer*
(2),
S Brodbeck
,
E Brouck
,
C Bueno
,
S Buerki
(7),
J Burnier
,
V de Caraffa
,
I Consortium
,
J David
,
C Definod
,
M Delplancke
(3),
D Ehrich
,
B Emerson
,
D Emerson
,
A Espíndola
(4),
F Felber
(6),
M Fernández-Mazuecos
,
F Forest
,
D Frey
,
C Geiser
,
T Gerdes
,
J Goudet
,
G Granereau
,
R Guadagnuolo
(5),
M de La Harpe
,
C Haufler
,
R Holderegger
(2),
M Imsand
,
H Joly
(3),
T Jorgensen
(2),
B Khadari
,
A Koller
,
G Kozlowski
(3),
P Küpfer
,
S Lappe
,
S Lappe*
,
D Levin
,
Z Li
,
G Litsios
,
M Lysak
,
T Mandáková
,
K Marhold
,
A Mastretta-Yanes
(2),
I Mayrose
,
P Mickelson
,
R Naisbit
,
M Navascués
,
S Neuenschwander
(2),
P Neuhaus
,
T van Noort*
,
J Nylander
,
S Otto
,
M Pajkovic*
,
C Parisod
(5),
S Pasche
,
M Peintinger
,
L Pelissier*
,
D Piñero
,
L Rieseberg
,
C Rothfels
,
K Ruckstuhl
,
I Sanmartín
,
S Santoni
,
A Sarr
(3),
B Schatz
,
J Smith
,
J Therrien
,
Y Triponez*
(2),
J Tuszynski
,
M Windham
,
M Yazbek
,
S Zamudio
,
S Zhan
,
J Zozomová-Lihová
,
S Španiel
,
Nils Arrigo
,
Djamel Baali-Cherif
,
Vincent Savolainen
,
Pablo Vargas
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