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<feed xmlns="http://www.w3.org/2005/Atom" xml:lang="en"><id>http://publicationslist.org/data/Nicolas.Pollet/atom.xml</id><title>Pollet Nicolas's Publications List</title>
<link rel="self" type="application/atom+xml" href="http://publicationslist.org/data/Nicolas.Pollet/atom.xml"/><link rel="alternate" type="text/html" href="http://publicationslist.org/Nicolas.Pollet"/><author><name>Pollet Nicolas</name><uri>http://publicationslist.org/Nicolas.Pollet</uri></author><icon>$basepathfavicon.ico</icon><subtitle>Recent additions to Pollet Nicolas's PublicationsList.org page</subtitle><logo>http://publicationslist.org/publications.png</logo><updated>2009-12-30T16:26:04Z</updated>

<entry>
<id>http://publicationslist.org/Nicolas.Pollet/refid38</id>
<updated>2009-12-30T16:25:23Z</updated>
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<title type='html'>Expression of immune genes during metamorphosis of Xenopus: a survey.</title>
<summary type='html'>This review focuses on what is known about the immune transcriptome during metamorphosis of Xenopus laevis and Silurana (Xenopus) tropicalis. This subject is of importance to obtain a global understanding of the physiological changes operating during metamorphosis. In turn, a good knowledge of the physiology of amphibian metamorphosis may contribute to the fight against amphibian decline and help ...&lt;br/&gt;&lt;br/&gt;Nicolas Pollet (2010)  &lt;i&gt;Front Biosci&lt;/i&gt; &lt;i&gt;&lt;/i&gt; &lt;i&gt;&lt;/i&gt; 15:  348-358&lt;br/&gt;</summary>
</entry>
<entry>
<id>http://publicationslist.org/Nicolas.Pollet/refid40</id>
<updated>2009-12-30T16:25:23Z</updated>
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<title type='html'>Database of queryable gene expression patterns for Xenopus.</title>
<summary type='html'>The precise localization of gene expression within the developing embryo, and how it changes over time, is one of the most important sources of information for elucidating gene function. As a searchable resource, this information has up until now been largely inaccessible to the Xenopus community. Here, we present a new database of Xenopus gene expression patterns, queryable by specific location o...&lt;br/&gt;&lt;br/&gt;Michael J Gilchrist, Mikkel B Christensen, Odile Bronchain, Frédéric Brunet, Albert Chesneau, Ursula Fenger, Timothy J Geach, Holly V Ironfield, Ferdinand Kaya, Sadia Kricha, Robert Lea, Karine Massé, Isabelle Néant, Elodie Paillard, Karine Parain, Muriel Perron, Ludivine Sinzelle, Jacob Souopgui, Raphaël Thuret, Qods Ymlahi-Ouazzani, Nicolas Pollet (2009)  &lt;i&gt;Dev Dyn&lt;/i&gt; &lt;i&gt;&lt;/i&gt; &lt;i&gt;&lt;/i&gt; 238: 6 1379-1388&lt;br/&gt;</summary>
</entry>
<entry>
<id>http://publicationslist.org/Nicolas.Pollet/refid39</id>
<updated>2009-12-30T16:25:23Z</updated>
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<title type='html'>Reduced levels of survival motor neuron protein leads to aberrant motoneuron growth in a Xenopus model of muscular atrophy.</title>
<summary type='html'>Spinal muscular atrophy (SMA) is a neurodegenerative disease characterized by motor neuron loss and skeletal muscle atrophy. The loss of function of the smn1 gene, the main supplier of survival motor neuron protein (SMN) protein in human, leads to reduced levels of SMN and eventually to SMA. Here, we ask if the amphibian Xenopus tropicalis can be a good model system to study SMA. Inhibition of the...&lt;br/&gt;&lt;br/&gt;Qods Ymlahi-Ouazzani, Odile J Bronchain, Elodie Paillard, Chantal Ballagny, Albert Chesneau, Aurélie Jadaud, André Mazabraud, Nicolas Pollet (2009)  &lt;i&gt;Neurogenetics&lt;/i&gt; &lt;i&gt;&lt;/i&gt; &lt;i&gt;&lt;/i&gt; :  &lt;br/&gt;</summary>
</entry>
<entry>
<id>http://publicationslist.org/Nicolas.Pollet/refid4</id>
<updated>2008-09-19T14:29:27Z</updated>
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<title type='html'>Identification of CUG-BP1/EDEN-BP target mRNAs in Xenopus tropicalis.</title>
<summary type='html'>The early development of many animals relies on the posttranscriptional regulations of maternally stored mRNAs. In particular, the translation of maternal mRNAs is tightly controlled during oocyte maturation and early mitotic cycles in Xenopus. The Embryonic Deadenylation ElemeNt (EDEN) and its associated protein EDEN-BP are known to trigger deadenylation and translational silencing to several mRN...&lt;br/&gt;&lt;br/&gt;Antoine Graindorge, Olivier Le Tonquèze, Raphaël Thuret, Nicolas Pollet, H Beverley Osborne, Yann Audic (2008)  &lt;i&gt;Nucleic Acids Res&lt;/i&gt; &lt;i&gt;&lt;/i&gt; &lt;i&gt;&lt;/i&gt; 36: 6 1861-1870&lt;br/&gt;</summary>
</entry>
<entry>
<id>http://publicationslist.org/Nicolas.Pollet/refid5</id>
<updated>2008-09-19T14:29:27Z</updated>
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<title type='html'>Evaluation of time profile reconstruction from complex two-color microarray designs.</title>
<summary type='html'>BACKGROUND: As an alternative to the frequently used &quot;reference design&quot; for two-channel microarrays, other designs have been proposed. These designs have been shown to be more profitable from a theoretical point of view (more replicates of the conditions of interest for the same number of arrays). However, the interpretation of the measurements is less straightforward and a reconstruction method i...&lt;br/&gt;&lt;br/&gt;Ana C Fierro, Raphael Thuret, Kristof Engelen, Gilles Bernot, Kathleen Marchal, Nicolas Pollet (2008)  &lt;i&gt;BMC Bioinformatics&lt;/i&gt; &lt;i&gt;&lt;/i&gt; &lt;i&gt;&lt;/i&gt; 9:  &lt;br/&gt;</summary>
</entry>
<entry>
<id>http://publicationslist.org/Nicolas.Pollet/refid3</id>
<updated>2008-09-19T14:29:27Z</updated>
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<title type='html'>Minimum information specification for in situ hybridization and immunohistochemistry experiments (MISFISHIE).</title>
<summary type='html'>One purpose of the biomedical literature is to report results in sufficient detail that the methods of data collection and analysis can be independently replicated and verified. Here we present reporting guidelines for gene expression localization experiments: the minimum information specification for in situ hybridization and immunohistochemistry experiments (MISFISHIE). MISFISHIE is modeled afte...&lt;br/&gt;&lt;br/&gt;Eric W Deutsch, Catherine A Ball, Jules J Berman, G Steven Bova, Alvis Brazma, Roger E Bumgarner, David Campbell, Helen C Causton, Jeffrey H Christiansen, Fabrice Daian, Delphine Dauga, Duncan R Davidson, Gregory Gimenez, Young Ah Goo, Sean Grimmond, Thorsten Henrich, Bernhard G Herrmann, Michael H Johnson, Martin Korb, Jason C Mills, Asa J Oudes, Helen E Parkinson, Laura E Pascal, Nicolas Pollet, John Quackenbush, Mirana Ramialison, Martin Ringwald, David Salgado, Susanna-Assunta Sansone, Gavin Sherlock, Christian J Stoeckert, Jason Swedlow, Ronald C Taylor, Laura Walashek, Anthony Warford, David G Wilkinson, Yi Zhou, Leonard I Zon, Alvin Y Liu, Lawrence D True (2008)  &lt;i&gt;Nat Biotechnol&lt;/i&gt; &lt;i&gt;&lt;/i&gt; &lt;i&gt;&lt;/i&gt; 26: 3 305-312&lt;br/&gt;</summary>
</entry>
<entry>
<id>http://publicationslist.org/Nicolas.Pollet/refid6</id>
<updated>2008-09-19T14:29:27Z</updated>
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<title type='html'>Xenbase: a Xenopus biology and genomics resource.</title>
<summary type='html'>Xenbase (www.xenbase.org) is a model organism database integrating a diverse array of biological and genomic data on the frogs, Xenopus laevis and Xenopus (Silurana) tropicalis. Data is collected from other databases, high-throughput screens and the scientific literature and integrated into a number of database modules covering subjects such as community, literature, gene and genomic analysis. Gen...&lt;br/&gt;&lt;br/&gt;Jeff B Bowes, Kevin A Snyder, Erik Segerdell, Ross Gibb, Chris Jarabek, Etienne Noumen, Nicolas Pollet, Peter D Vize (2008)  &lt;i&gt;Nucleic Acids Res&lt;/i&gt; &lt;i&gt;&lt;/i&gt; &lt;i&gt;&lt;/i&gt; 36: Database issue D761-D767&lt;br/&gt;</summary>
</entry>
<entry>
<id>http://publicationslist.org/Nicolas.Pollet/refid41</id>
<updated>2009-12-30T16:25:23Z</updated>
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<title type='html'>Evading the annotation bottleneck: using sequence similarity to search non-sequence gene data.</title>
<summary type='html'>BACKGROUND: Non-sequence gene data (images, literature, etc.) can be found in many different public databases. Access to these data is mostly by text based methods using gene names; however, gene annotation is neither complete, nor fully systematic between organisms, and is also not generally stable over time. This provides some challenges for text based access, especially for cross-species search...&lt;br/&gt;&lt;br/&gt;Michael J Gilchrist, Mikkel B Christensen, Richard Harland, Nicolas Pollet, James C Smith, Naoto Ueno, Nancy Papalopulu (2008)  &lt;i&gt;BMC Bioinformatics&lt;/i&gt; &lt;i&gt;&lt;/i&gt; &lt;i&gt;&lt;/i&gt; 9:  &lt;br/&gt;</summary>
</entry>
<entry>
<id>http://publicationslist.org/Nicolas.Pollet/refid37</id>
<updated>2009-12-30T16:25:23Z</updated>
<link rel='alternate' type='text/html' href='http://publicationslist.org/Nicolas.Pollet#refid37'/>
<title type='html'>An ontology for Xenopus anatomy and development.</title>
<summary type='html'>BACKGROUND: The frogs Xenopus laevis and Xenopus (Silurana) tropicalis are model systems that have produced a wealth of genetic, genomic, and developmental information. Xenbase is a model organism database that provides centralized access to this information, including gene function data from high-throughput screens and the scientific literature. A controlled, structured vocabulary for Xenopus ana...&lt;br/&gt;&lt;br/&gt;Erik Segerdell, Jeff B Bowes, Nicolas Pollet, Peter D Vize (2008)  &lt;i&gt;BMC Dev Biol&lt;/i&gt; &lt;i&gt;&lt;/i&gt; &lt;i&gt;&lt;/i&gt; 8:  &lt;br/&gt;</summary>
</entry>
<entry>
<id>http://publicationslist.org/Nicolas.Pollet/refid2</id>
<updated>2009-12-30T16:25:23Z</updated>
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<title type='html'>Transgenesis procedures in Xenopus.</title>
<summary type='html'>Stable integration of foreign DNA into the frog genome has been the purpose of several studies aimed at generating transgenic animals or producing mutations of endogenous genes. Inserting DNA into a host genome can be achieved in a number of ways. In Xenopus, different strategies have been developed which exhibit specific molecular and technical features. Although several of these technologies wer...&lt;br/&gt;&lt;br/&gt;Albert Chesneau, Laurent M Sachs, Norin Chai, Yonglong Chen, Louis Du Pasquier, Jana Loeber, Nicolas Pollet, Michael Reilly, Daniel L Weeks, Odile J Bronchain (2008)  &lt;i&gt;Biol Cell&lt;/i&gt; &lt;i&gt;&lt;/i&gt; &lt;i&gt;&lt;/i&gt; 100: 9 503-521&lt;br/&gt;</summary>
</entry>
<entry>
<id>http://publicationslist.org/Nicolas.Pollet/refid10</id>
<updated>2008-09-19T14:29:27Z</updated>
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<title type='html'>Properties of the various Botmar1 transcripts in imagoes of the bumble bee, Bombus terrestris (Hymenoptera: Apidae).</title>
<summary type='html'>Botmar1 elements are mariner-like elements (MLEs), class II transposable elements that occur in the genome of the bumble bee, Bombus terrestris. Each haploid B. terrestris genome contains about 230 Botmar1, consisting entirely of 1.3-kb and 0.85-kb elements. During their evolution in the B. terrestris genome, two Botmar1 lineages have been differentiated in terms of their nucleic acid sequences an...&lt;br/&gt;&lt;br/&gt;Agnès Petit, Florence Rouleux-Bonnin, Marie Lambelé, Nicolas Pollet, Yves Bigot (2007)  &lt;i&gt;Gene&lt;/i&gt; &lt;i&gt;&lt;/i&gt; &lt;i&gt;&lt;/i&gt; 390: 1-2 52-66&lt;br/&gt;</summary>
</entry>
<entry>
<id>http://publicationslist.org/Nicolas.Pollet/refid9</id>
<updated>2008-09-19T14:29:27Z</updated>
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<title type='html'>tBid mediated activation of the mitochondrial death pathway leads to genetic ablation of the lens in Xenopus laevis.</title>
<summary type='html'>Xenopus is a well proven model for a wide variety of developmental studies, including cell lineage. Cell lineage in Xenopus has largely been addressed by injection of tracer molecules or by micro-dissection elimination of blastomeres. Here we describe a genetic method for cell ablation based on the use of tBid, a direct activator of the mitochondrial apoptotic pathway. In mammalian cells, cross-ta...&lt;br/&gt;&lt;br/&gt;D Du Pasquier, A Chesneau, Q Ymlahi-Ouazzani, R Boistel, N Pollet, C Ballagny, L M Sachs, B Demeneix, A Mazabraud (2007)  &lt;i&gt;Genesis&lt;/i&gt; &lt;i&gt;&lt;/i&gt; &lt;i&gt;&lt;/i&gt; 45: 1 1-10&lt;br/&gt;</summary>
</entry>
<entry>
<id>http://publicationslist.org/Nicolas.Pollet/refid8</id>
<updated>2008-09-19T14:29:27Z</updated>
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<title type='html'>Exploring nervous system transcriptomes during embryogenesis and metamorphosis in Xenopus tropicalis using EST analysis.</title>
<summary type='html'>BACKGROUND: The western African clawed frog Xenopus tropicalis is an anuran amphibian species now used as model in vertebrate comparative genomics. It provides the same advantages as Xenopus laevis but is diploid and has a smaller genome of 1.7 Gbp. Therefore X. tropicalis is more amenable to systematic transcriptome surveys. We initiated a large-scale partial cDNA sequencing project to provide a ...&lt;br/&gt;&lt;br/&gt;Ana C Fierro, Raphaël Thuret, Laurent Coen, Muriel Perron, Barbara A Demeneix, Maurice Wegnez, Gabor Gyapay, Jean Weissenbach, Patrick Wincker, André Mazabraud, Nicolas Pollet (2007)  &lt;i&gt;BMC Genomics&lt;/i&gt; &lt;i&gt;&lt;/i&gt; &lt;i&gt;&lt;/i&gt; 8:  &lt;br/&gt;</summary>
</entry>
<entry>
<id>http://publicationslist.org/Nicolas.Pollet/refid7</id>
<updated>2008-09-19T14:29:27Z</updated>
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<title type='html'>The olig family: phylogenetic analysis and early gene expression in Xenopus tropicalis.</title>
<summary type='html'>The olig genes form a small subfamily of basic helix-loop-helix transcription factors. They were discovered in 2000 as genes required for oligodendrocyte lineage specification. Since then, olig genes have been identified in various vertebrate species and corresponding sequences accumulated within genomic databases. Until now, three groups of olig genes have been characterized. Our phylogenetic ana...&lt;br/&gt;&lt;br/&gt;O J Bronchain, N Pollet, Q Ymlahi-Ouazzani, S Dhorne-Pollet, J C Helbling, J E Lecarpentier, K Percheron, M Wegnez (2007)  &lt;i&gt;Dev Genes Evol&lt;/i&gt; &lt;i&gt;&lt;/i&gt; &lt;i&gt;&lt;/i&gt; 217: 7 485-497&lt;br/&gt;</summary>
</entry>
<entry>
<id>http://publicationslist.org/Nicolas.Pollet/refid1</id>
<updated>2009-12-30T16:25:23Z</updated>
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<title type='html'>Insights from Xenopus genomes.</title>
<summary type='html'>Amphibians have been used since the 19th century as vertebrate models for the experimentalist. Since 50 years or so, Xenopus laevis is the most widely used anuran amphibian research organism. However, because it is a pseudo-tetraploid species, its genetics has been lagging behind. Contemporary studies shift their focus to the only Xenopus species known to be diploid, the small African tropical cla...&lt;br/&gt;&lt;br/&gt;N Pollet, A Mazabraud (2006)  &lt;i&gt;Genome Dyn&lt;/i&gt; &lt;i&gt;&lt;/i&gt; &lt;i&gt;&lt;/i&gt; 2:  138-153&lt;br/&gt;</summary>
</entry>
<entry>
<id>http://publicationslist.org/Nicolas.Pollet/refid13</id>
<updated>2008-09-19T14:29:27Z</updated>
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<title type='html'>The mariner transposons belonging to the irritans subfamily were maintained in chordate genomes by vertical transmission.</title>
<summary type='html'>Mariner-like elements (MLEs) belong to the Tc1-mariner superfamily of DNA transposons, which is very widespread in animal genomes. We report here the first complete description of a MLE, Xtmar1, within the genome of a poikilotherm vertebrate, the amphibian Xenopus tropicalis. A close relative, XlMLE, is also characterized within the genome of a sibling species, Xenopus laevis. The phylogenetic ana...&lt;br/&gt;&lt;br/&gt;Ludivine Sinzelle, Albert Chesneau, Yves Bigot, André Mazabraud, Nicolas Pollet (2006)  &lt;i&gt;J Mol Evol&lt;/i&gt; &lt;i&gt;&lt;/i&gt; &lt;i&gt;&lt;/i&gt; 62: 1 53-65&lt;br/&gt;</summary>
</entry>
<entry>
<id>http://publicationslist.org/Nicolas.Pollet/refid11</id>
<updated>2008-09-19T14:29:27Z</updated>
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<title type='html'>Generation of trangenic Xenopus laevis using the Sleeping Beauty transposon system.</title>
<summary type='html'>Using the Sleeping Beauty (SB) transposon system, we have developed a simple method for the generation of Xenopus laevis transgenic lines. The transgenesis protocol is based on the co-injection of the SB transposase mRNA and a GFP-reporter transposon into one-cell stage embryos. Transposase-dependent reporter gene expression was observed in cell clones and in hemi-transgenic animals. We determined...&lt;br/&gt;&lt;br/&gt;L Sinzelle, J Vallin, L Coen, A Chesneau, D Du Pasquier, N Pollet, B Demeneix, A Mazabraud (2006)  &lt;i&gt;Transgenic Res&lt;/i&gt; &lt;i&gt;&lt;/i&gt; &lt;i&gt;&lt;/i&gt; 15: 6 751-760&lt;br/&gt;</summary>
</entry>
<entry>
<id>http://publicationslist.org/Nicolas.Pollet/refid12</id>
<updated>2008-09-19T14:29:27Z</updated>
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<title type='html'>Identification of post-transcriptionally regulated Xenopus tropicalis maternal mRNAs by microarray.</title>
<summary type='html'>Cytoplasmic control of the adenylation state of mRNAs is a critical post-transcriptional process involved in the regulation of mRNAs stability and translational efficiency. The early development of Xenopus laevis has been a major model for the study of such regulations. We describe here a microarray analysis to identify mRNAs that are regulated by changes in their adenylation state during oogenesi...&lt;br/&gt;&lt;br/&gt;Antoine Graindorge, Raphaël Thuret, Nicolas Pollet, H Beverley Osborne, Yann Audic (2006)  &lt;i&gt;Nucleic Acids Res&lt;/i&gt; &lt;i&gt;&lt;/i&gt; &lt;i&gt;&lt;/i&gt; 34: 3 986-995&lt;br/&gt;</summary>
</entry>
<entry>
<id>http://publicationslist.org/Nicolas.Pollet/refid15</id>
<updated>2008-09-19T14:29:27Z</updated>
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<title type='html'>Characterization of multiple lineages of Tc1-like elements within the genome of the amphibian Xenopus tropicalis.</title>
<summary type='html'>We have used genomic sequencing data extracted from the first assembly of the Xenopus tropicalis genome combined with a degenerated PCR approach to identify multiple lineages of Tc1 related transposable elements. Full-length elements were isolated in each lineage and were characterized. Most of them exhibit the typical characteristics of Tc1-like elements (TLEs). An open reading frame (ORF) encodi...&lt;br/&gt;&lt;br/&gt;Ludivine Sinzelle, Nicolas Pollet, Yves Bigot, André Mazabraud (2005)  &lt;i&gt;Gene&lt;/i&gt; &lt;i&gt;&lt;/i&gt; &lt;i&gt;&lt;/i&gt; 349:  187-196&lt;br/&gt;</summary>
</entry>
<entry>
<id>http://publicationslist.org/Nicolas.Pollet/refid14</id>
<updated>2008-09-19T14:29:27Z</updated>
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<title type='html'>Post-transcriptional regulation in Xenopus embryos: role and targets of EDEN-BP.</title>
<summary type='html'>EDEN (embryo deadenylation element)-dependent deadenylation is a regulatory process that was initially identified in Xenopus laevis early embryos and was subsequently shown to exist in Drosophila oocytes. Recent data showed that this regulatory process is required for somitic segmentation in Xenopus. Inactivation of EDEN-BP (EDEN-binding protein) causes severe segmentation defects, and the express...&lt;br/&gt;&lt;br/&gt;H B Osborne, C Gautier-Courteille, A Graindorge, C Barreau, Y Audic, R Thuret, N Pollet, L Paillard (2005)  &lt;i&gt;Biochem Soc Trans&lt;/i&gt; &lt;i&gt;&lt;/i&gt; &lt;i&gt;&lt;/i&gt; 33: Pt 6 1541-1543&lt;br/&gt;</summary>
</entry>
<entry>
<id>http://publicationslist.org/Nicolas.Pollet/refid16</id>
<updated>2008-09-19T14:29:27Z</updated>
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<title type='html'>An atlas of differential gene expression during early Xenopus embryogenesis.</title>
<summary type='html'>We have carried out a large-scale, semi-automated whole-mount in situ hybridization screen of 8369 cDNA clones in Xenopus laevis embryos. We confirm that differential gene expression is prevalent during embryogenesis since 24% of the clones are expressed non-ubiquitously and 8% are organ or cell type specific marker genes. Sequence analysis and clustering yielded 723 unique genes displaying a diff...&lt;br/&gt;&lt;br/&gt;Nicolas Pollet, Nadja Muncke, Barbara Verbeek, Yan Li, Ursula Fenger, Hajo Delius, Christof Niehrs (2005)  &lt;i&gt;Mech Dev&lt;/i&gt; &lt;i&gt;&lt;/i&gt; &lt;i&gt;&lt;/i&gt; 122: 3 365-439&lt;br/&gt;</summary>
</entry>
<entry>
<id>http://publicationslist.org/Nicolas.Pollet/refid17</id>
<updated>2008-09-19T14:29:27Z</updated>
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<title type='html'>Reliability of gene expression ratios for cDNA microarrays in multiconditional experiments with a reference design.</title>
<summary type='html'>In a typical gene expression profiling experiment with multiple conditions, a common reference sample is used for co-hybridization with the samples to yield expression ratios. Differential expression for any other sample pair can then be calculated by assembling the ratios from their hybridizations with the reference. In this study we test the validity of this approach. Differential expression of ...&lt;br/&gt;&lt;br/&gt;Rainer König, Danila Baldessari, Nicolas Pollet, Christof Niehrs, Roland Eils (2004)  &lt;i&gt;Nucleic Acids Res&lt;/i&gt; &lt;i&gt;&lt;/i&gt; &lt;i&gt;&lt;/i&gt; 32: 3 &lt;br/&gt;</summary>
</entry>
<entry>
<id>http://publicationslist.org/Nicolas.Pollet/refid19</id>
<updated>2008-09-19T14:29:27Z</updated>
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<title type='html'>The transmembrane protein XFLRT3 forms a complex with FGF receptors and promotes FGF signalling.</title>
<summary type='html'>Fibroblast growth factors (FGFs) signal through high-affinity tyrosine kinase receptors to regulate a diverse range of cellular processes, including cell growth, differentiation and migration, as well as cell death. Here we identify XFLRT3, a member of a leucine-rich-repeat transmembrane protein family, as a novel modulator of FGF signalling. XFLRT3 is co-expressed with FGFs, and its expression is...&lt;br/&gt;&lt;br/&gt;Ralph T Böttcher, Nicolas Pollet, Hajo Delius, Christof Niehrs (2004)  &lt;i&gt;Nat Cell Biol&lt;/i&gt; &lt;i&gt;&lt;/i&gt; &lt;i&gt;&lt;/i&gt; 6: 1 38-44&lt;br/&gt;</summary>
</entry>
<entry>
<id>http://publicationslist.org/Nicolas.Pollet/refid20</id>
<updated>2008-09-19T14:29:27Z</updated>
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<title type='html'>Cyclic expression of esr9 gene in Xenopus presomitic mesoderm.</title>
<summary type='html'>During somitogenesis, the cycling expression of members of the Notch signalling cascade is involved in a segmentation clock that regulates the periodic budding of somites in chicken, mouse, and zebrafish. In frog, genes with cycling expression in the presomitic mesoderm have not been reported. Here, we describe the expression of Xenopus esr9 and esr10, two new members of the Hairy/Enhancer of spli...&lt;br/&gt;&lt;br/&gt;Yan Li, Ursula Fenger, Christof Niehrs, Nicolas Pollet (2003)  &lt;i&gt;Differentiation&lt;/i&gt; &lt;i&gt;&lt;/i&gt; &lt;i&gt;&lt;/i&gt; 71: 1 83-89&lt;br/&gt;</summary>
</entry>
<entry>
<id>http://publicationslist.org/Nicolas.Pollet/refid18</id>
<updated>2008-09-19T14:29:27Z</updated>
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<title type='html'>In situ analysis of gene expression in Xenopus embryos.</title>
<summary type='html'>The molecular anatomy of the vertebrate embryo was systematically analysed through gene expression during early development of the Xenopus frog using whole-mount in situ hybridization. Expression patterns are documented and assembled into the database Axeldb (http://www.dkfz-heidelberg.de/abt0135/axeldb.htm). Synexpression groups representing genes with shared, complex expression pattern that pred...&lt;br/&gt;&lt;br/&gt;Nicolas Pollet, Hajo Delius, Christof Niehrs (2003)  &lt;i&gt;C R Biol&lt;/i&gt; &lt;i&gt;&lt;/i&gt; &lt;i&gt;&lt;/i&gt; 326: 10-11 1011-1017&lt;br/&gt;</summary>
</entry>
<entry>
<id>http://publicationslist.org/Nicolas.Pollet/refid21</id>
<updated>2008-09-19T14:29:27Z</updated>
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<title type='html'>Cloning and characterization of Plx2 and Plx3, two additional Polo-like kinases from Xenopus laevis.</title>
<summary type='html'>Members of the family of Polo-like kinases are implicated in the regulation of cell cycle progression in all eukaryotes. In Xenopus laevis, only one member of this family, Plx1, has previously been described. Here we report the cloning and characterization of X. laevis Plx2 and Plx3, the likely homologs of mammalian Plk2 (Snk) and Plk3 (Fnk/Prk), respectively. RNA expression studies indicate that ...&lt;br/&gt;&lt;br/&gt;P I Duncan, N Pollet, C Niehrs, E A Nigg (2001)  &lt;i&gt;Exp Cell Res&lt;/i&gt; &lt;i&gt;&lt;/i&gt; &lt;i&gt;&lt;/i&gt; 270: 1 78-87&lt;br/&gt;</summary>
</entry>
<entry>
<id>http://publicationslist.org/Nicolas.Pollet/refid22</id>
<updated>2008-09-19T14:29:27Z</updated>
<link rel='alternate' type='text/html' href='http://publicationslist.org/Nicolas.Pollet#refid22'/>
<title type='html'>Nrarp is a novel intracellular component of the Notch signaling pathway.</title>
<summary type='html'>The Lin12/Notch receptors regulate cell fate during embryogenesis by activating the expression of downstream target genes. These receptors signal via their intracellular domain (ICD), which is released from the plasma membrane by proteolytic processing and associates in the nucleus with the CSL family of DNA-binding proteins to form a transcriptional activator. How the CSL/ICD complex activates tr...&lt;br/&gt;&lt;br/&gt;E Lamar, G Deblandre, D Wettstein, V Gawantka, N Pollet, C Niehrs, C Kintner (2001)  &lt;i&gt;Genes Dev&lt;/i&gt; &lt;i&gt;&lt;/i&gt; &lt;i&gt;&lt;/i&gt; 15: 15 1885-1899&lt;br/&gt;</summary>
</entry>
<entry>
<id>http://publicationslist.org/Nicolas.Pollet/refid24</id>
<updated>2008-09-19T14:29:27Z</updated>
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<title type='html'>Increased XRALDH2 activity has a posteriorizing effect on the central nervous system of Xenopus embryos.</title>
<summary type='html'>Retinoic acid (RA) metabolizing enzymes play important roles in RA signaling during vertebrate embryogenesis. We have previously reported on a RA degrading enzyme, XCYP26, which appears to be critical for the anteroposterior patterning of the central nervous system (EMBO J. 17 (1998) 7361). Here, we report on the sequence, expression and function of its counterpart, XRALDH2, a RA generating enzyme...&lt;br/&gt;&lt;br/&gt;Y Chen, N Pollet, C Niehrs, T Pieler (2001)  &lt;i&gt;Mech Dev&lt;/i&gt; &lt;i&gt;&lt;/i&gt; &lt;i&gt;&lt;/i&gt; 101: 1-2 91-103&lt;br/&gt;</summary>
</entry>
<entry>
<id>http://publicationslist.org/Nicolas.Pollet/refid23</id>
<updated>2008-09-19T14:29:27Z</updated>
<link rel='alternate' type='text/html' href='http://publicationslist.org/Nicolas.Pollet#refid23'/>
<title type='html'>Expression profiling by systematic high-throughput in situ hybridization to whole-mount embryos.</title>
<summary type='html'>N Pollet, C Niehrs (2001)  &lt;i&gt;Methods Mol Biol&lt;/i&gt; &lt;i&gt;&lt;/i&gt; &lt;i&gt;&lt;/i&gt; 175:  309-321&lt;br/&gt;</summary>
</entry>
<entry>
<id>http://publicationslist.org/Nicolas.Pollet/refid27</id>
<updated>2008-09-19T14:29:27Z</updated>
<link rel='alternate' type='text/html' href='http://publicationslist.org/Nicolas.Pollet#refid27'/>
<title type='html'>Axeldb: a Xenopus laevis database focusing on gene expression.</title>
<summary type='html'>Axeldb is a database storing and integrating gene expression patterns and DNA sequences identified in a large-scale in situ hybridization study in Xenopus laevis embryos. The data are organised in a format appropriate for comprehensive analysis, and enable comparison of images of expression pattern for any given set of genes. Information on literature, cDNA clones and their availability, nucleotid...&lt;br/&gt;&lt;br/&gt;N Pollet, H A Schmidt, V Gawantka, M Vingron, C Niehrs (2000)  &lt;i&gt;Nucleic Acids Res&lt;/i&gt; &lt;i&gt;&lt;/i&gt; &lt;i&gt;&lt;/i&gt; 28: 1 139-140&lt;br/&gt;</summary>
</entry>
<entry>
<id>http://publicationslist.org/Nicolas.Pollet/refid25</id>
<updated>2008-09-19T14:29:27Z</updated>
<link rel='alternate' type='text/html' href='http://publicationslist.org/Nicolas.Pollet#refid25'/>
<title type='html'>Features of the mammal mar1 transposons in the human, sheep, cow, and mouse genomes and implications for their evolution.</title>
<summary type='html'>Mariner-like elements (MLE) belong to the Tc1/ mariner superfamily of class II transposons. We have analyzed the mariner related to the cecropia subfamily, and called mammal mar1, in four mammalian genomes, Bos taurus (Bovidae), Homo sapiens (Primata), Mus musculus (Rodentia), and Ovis aries (Ovidae). Three kinds of MLE sequences were found in all these species: full-length 1.3-kbp elements, short...&lt;br/&gt;&lt;br/&gt;M V Demattei, C Augé-Gouillou, N Pollet, M H Hamelin, M Meunier-Rotival, Y Bigot (2000)  &lt;i&gt;Mamm Genome&lt;/i&gt; &lt;i&gt;&lt;/i&gt; &lt;i&gt;&lt;/i&gt; 11: 12 1111-1116&lt;br/&gt;</summary>
</entry>
<entry>
<id>http://publicationslist.org/Nicolas.Pollet/refid26</id>
<updated>2008-09-19T14:29:27Z</updated>
<link rel='alternate' type='text/html' href='http://publicationslist.org/Nicolas.Pollet#refid26'/>
<title type='html'>In silico analysis of gene expression patterns during early development of Xenopus laevis.</title>
<summary type='html'>The information as to where and when a mRNA is present in a given cell is essential to bridge the gap between the DNA sequence of a gene and its physiological function. Therefore, a major component of functional genomics is to characterize the levels and the spatio-temporal domains of gene expression. Currently, there is just a few specialised public databases available storing the data on gene ex...&lt;br/&gt;&lt;br/&gt;N Pollet, H A Schmidt, V Gawantka, C Niehrs, M Vingron (2000)  &lt;i&gt;Pac Symp Biocomput&lt;/i&gt; &lt;i&gt;&lt;/i&gt; &lt;i&gt;&lt;/i&gt; :  443-454&lt;br/&gt;</summary>
</entry>
<entry>
<id>http://publicationslist.org/Nicolas.Pollet/refid30</id>
<updated>2008-09-19T14:29:27Z</updated>
<link rel='alternate' type='text/html' href='http://publicationslist.org/Nicolas.Pollet#refid30'/>
<title type='html'>Mutations in JAGGED1 gene are predominantly sporadic in Alagille syndrome.</title>
<summary type='html'>BACKGROUNDS &amp; AIMS: Mutations in the JAGGED1 gene are responsible for the Alagille syndrome, an autosomal dominant disorder characterized by neonatal jaundice, intrahepatic cholestasis, and developmental disorders affecting the liver, heart, vertebrae, eyes, and face. We screened a large group of patients for mutations in JAGGED1 and studied transmission of the mutations. METHODS: The coding seque...&lt;br/&gt;&lt;br/&gt;C Crosnier, C Driancourt, N Raynaud, S Dhorne-Pollet, N Pollet, O Bernard, M Hadchouel, M Meunier-Rotival (1999)  &lt;i&gt;Gastroenterology&lt;/i&gt; &lt;i&gt;&lt;/i&gt; &lt;i&gt;&lt;/i&gt; 116: 5 1141-1148&lt;br/&gt;</summary>
</entry>
<entry>
<id>http://publicationslist.org/Nicolas.Pollet/refid29</id>
<updated>2008-09-19T14:29:27Z</updated>
<link rel='alternate' type='text/html' href='http://publicationslist.org/Nicolas.Pollet#refid29'/>
<title type='html'>Periodic repression of Notch pathway genes governs the segmentation of Xenopus embryos.</title>
<summary type='html'>During the development of the vertebrate embryo, genes encoding components of the Notch signaling pathway are required for subdividing the paraxial mesoderm into repeating segmental structures, called somites. These genes are thought to act in the presomitic mesoderm when cells form prospective somites, called somitomeres, but their exact function remains unknown. To address this issue, we have id...&lt;br/&gt;&lt;br/&gt;W C Jen, V Gawantka, N Pollet, C Niehrs, C Kintner (1999)  &lt;i&gt;Genes Dev&lt;/i&gt; &lt;i&gt;&lt;/i&gt; &lt;i&gt;&lt;/i&gt; 13: 11 1486-1499&lt;br/&gt;</summary>
</entry>
<entry>
<id>http://publicationslist.org/Nicolas.Pollet/refid28</id>
<updated>2008-09-19T14:29:27Z</updated>
<link rel='alternate' type='text/html' href='http://publicationslist.org/Nicolas.Pollet#refid28'/>
<title type='html'>Synexpression groups in eukaryotes.</title>
<summary type='html'>In 1960, Jacob and Monod described the bacterial operon, a cluster of functionally interacting genes whose expression is tightly coordinated. Global expression analysis has shown that the highly coordinate expression of genes functioning in common processes is also a widespread phenomenon in eukaryotes. These sets of co-regulated genes, or 'synexpression groups', show a striking parallel to the op...&lt;br/&gt;&lt;br/&gt;C Niehrs, N Pollet (1999)  &lt;i&gt;Nature&lt;/i&gt; &lt;i&gt;&lt;/i&gt; &lt;i&gt;&lt;/i&gt; 402: 6761 483-487&lt;br/&gt;</summary>
</entry>
<entry>
<id>http://publicationslist.org/Nicolas.Pollet/refid31</id>
<updated>2008-09-19T14:29:27Z</updated>
<link rel='alternate' type='text/html' href='http://publicationslist.org/Nicolas.Pollet#refid31'/>
<title type='html'>Gene expression screening in Xenopus identifies molecular pathways, predicts gene function and provides a global view of embryonic patterning.</title>
<summary type='html'>In a large-scale gene expression screen 1765 randomly picked cDNAs were analyzed by whole-mount in situ hybridization in Xenopus embryos. Two hundred and seventy three unique, differentially expressed genes were identified, 204 of which are novel in Xenopus. Partial DNA sequences and expression patterns were documented and assembled into a database, 'AXelDB'. Approximately 30% of cDNAs analyzed re...&lt;br/&gt;&lt;br/&gt;V Gawantka, N Pollet, H Delius, M Vingron, R Pfister, R Nitsch, C Blumenstock, C Niehrs (1998)  &lt;i&gt;Mech Dev&lt;/i&gt; &lt;i&gt;&lt;/i&gt; &lt;i&gt;&lt;/i&gt; 77: 2 95-141&lt;br/&gt;</summary>
</entry>
<entry>
<id>http://publicationslist.org/Nicolas.Pollet/refid32</id>
<updated>2008-09-19T14:29:27Z</updated>
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<title type='html'>Construction of an integrated physical and gene map of human chromosome 20p12 providing candidate genes for Alagille syndrome.</title>
<summary type='html'>Physical mapping and localization of eSTS markers were used to generate an integrated physical and gene map covering a approximately 10-Mb region of human chromosome 20p12 containing the Alagille syndrome (AGS) locus. Seventy-four STSs, 28 of which were derived from cDNA sequences, mapped with an average resolution of 135 kb. The 28 eSTS markers define 20 genes. Six known genes, namely CHGB, BMP2,...&lt;br/&gt;&lt;br/&gt;N Pollet, C Boccaccio, S Dhorne-Pollet, C Driancourt, N Raynaud, C Auffray, M Hadchouel, M Meunier-Rotival (1997)  &lt;i&gt;Genomics&lt;/i&gt; &lt;i&gt;&lt;/i&gt; &lt;i&gt;&lt;/i&gt; 42: 3 489-498&lt;br/&gt;</summary>
</entry>
<entry>
<id>http://publicationslist.org/Nicolas.Pollet/refid35</id>
<updated>2008-09-19T14:29:27Z</updated>
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<title type='html'>Alagille syndrome in 1995. Clinical and genetic data</title>
<summary type='html'>J F Deleuze, S Dhorne-Pollet, N Pollet, M Meunier-Rotival, M Hadchouel (1995)  &lt;i&gt;Gastroenterol Clin Biol&lt;/i&gt; &lt;i&gt;&lt;/i&gt; &lt;i&gt;&lt;/i&gt; 19: 6-7 587-596&lt;br/&gt;</summary>
</entry>
<entry>
<id>http://publicationslist.org/Nicolas.Pollet/refid33</id>
<updated>2008-09-19T14:29:27Z</updated>
<link rel='alternate' type='text/html' href='http://publicationslist.org/Nicolas.Pollet#refid33'/>
<title type='html'>Human and other mammalian genomes contain transposons of the mariner family.</title>
<summary type='html'>Internal fragments of the putative transposase gene of mariner-like elements (MLEs) were amplified from human, mouse, rat, chinese hamster, sheep and bovine genomic DNAs by polymerase chain reaction (PCR). The sequences identified in human, ovine and bovine genomes correspond to ancient degenerate transposons. Screening mammalian sequence libraries identified a truncated element in the human ABL g...&lt;br/&gt;&lt;br/&gt;C Auge-Gouillou, Y Bigot, N Pollet, M H Hamelin, M Meunier-Rotival, G Periquet (1995)  &lt;i&gt;FEBS Lett&lt;/i&gt; &lt;i&gt;&lt;/i&gt; &lt;i&gt;&lt;/i&gt; 368: 3 541-546&lt;br/&gt;</summary>
</entry>
<entry>
<id>http://publicationslist.org/Nicolas.Pollet/refid34</id>
<updated>2008-09-19T14:29:27Z</updated>
<link rel='alternate' type='text/html' href='http://publicationslist.org/Nicolas.Pollet#refid34'/>
<title type='html'>Construction of a 3.7-Mb physical map within human chromosome 20p12 ordering 18 markers in the Alagille syndrome locus.</title>
<summary type='html'>Alagille syndrome (AGS, MIM 118450) is associated with human chromosome band 20p12. To study this region, we constructed a 3.7-Mb physical map using 36 YACs isolated from the CEPH YAC library with three sequence-tagged sites (STS): D20S503, D20S41, and D20S188. New STSs were obtained from 6 isolated YAC end-fragments. Eighteen markers were ordered on the contig as follows:20ptel-D20S177-D20S175-D2...&lt;br/&gt;&lt;br/&gt;N Pollet, S Dhorne-Pollet, J F Deleuze, C Boccaccio, C Driancourt, N Raynaud, D Le Paslier, M Hadchouel, M Meunier-Rotival (1995)  &lt;i&gt;Genomics&lt;/i&gt; &lt;i&gt;&lt;/i&gt; &lt;i&gt;&lt;/i&gt; 27: 3 467-474&lt;br/&gt;</summary>
</entry>
<entry>
<id>http://publicationslist.org/Nicolas.Pollet/refid36</id>
<updated>2008-09-19T14:29:27Z</updated>
<link rel='alternate' type='text/html' href='http://publicationslist.org/Nicolas.Pollet#refid36'/>
<title type='html'>Deleted chromosome 20 from a patient with Alagille syndrome isolated in a cell hybrid through leucine transport selection: study of three candidate genes.</title>
<summary type='html'>Alagille syndrome (AGS) is a well-defined genetic entity assigned to the short arm of Chromosome (Chr) 20 by a series of observations of AGS patients associated with microdeletions in this region. By fusing lymphoblastoid cells of an AGS patient that exhibited a microdeletion in the short arm of Chr 20 encompassing bands p11.23 to p12.3 with rodent thermosensitive mutant cells (CHOtsH1-1) deficien...&lt;br/&gt;&lt;br/&gt;J F Deleuze, S Dhorne, J Hazan, E Borghi, N Raynaud, N Pollet, M Meunier-Rotival, J Deschatrette, D Alagille, M Hadchouel (1994)  &lt;i&gt;Mamm Genome&lt;/i&gt; &lt;i&gt;&lt;/i&gt; &lt;i&gt;&lt;/i&gt; 5: 11 663-669&lt;br/&gt;</summary>
</entry>
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