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<feed xmlns="http://www.w3.org/2005/Atom" xml:lang="en"><id>http://publicationslist.org/data/fj.azuaje/atom.xml</id><title>Francisco Azuaje's Publications List</title>
<link rel="self" type="application/atom+xml" href="http://publicationslist.org/data/fj.azuaje/atom.xml"/><link rel="alternate" type="text/html" href="http://publicationslist.org/fj.azuaje"/><author><name>Francisco Azuaje</name><uri>http://publicationslist.org/fj.azuaje</uri></author><icon>$basepathfavicon.ico</icon><subtitle>Recent additions to Francisco Azuaje's PublicationsList.org page</subtitle><logo>http://publicationslist.org/publications.png</logo><updated>2012-01-20T09:27:29Z</updated>

<entry>
<id>http://publicationslist.org/fj.azuaje/refid173</id>
<updated>2012-01-20T09:27:22Z</updated>
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<title type='html'>Prediction of Adverse Cardiovascular Events of Noncardiovascular Drugs through Drug-Target Interaction Networks


</title>
<summary type='html'>FJ Azuaje, Y Devaux,  DR Wagner (2012)  &lt;i&gt;Clinical and Translational Science&lt;/i&gt; :  (Article first published online : 10 JAN 2012)&lt;br/&gt;</summary>
</entry>
<entry>
<id>http://publicationslist.org/fj.azuaje/refid172</id>
<updated>2012-01-19T17:52:28Z</updated>
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<title type='html'>Use of Circulating MicroRNAs to Diagnose Acute Myocardial Infarction.</title>
<summary type='html'>Devaux D, Vausort M, Goretti E, Nazarov PV, Azuaje F, Gilson G, Corsten M, Schroen B, Lair ML, Heymans S, Wagner DR. (2012)  &lt;i&gt;Clinical Chemistry&lt;/i&gt; :  &lt;br/&gt;</summary>
</entry>
<entry>
<id>http://publicationslist.org/fj.azuaje/refid159</id>
<updated>2011-04-17T11:35:56Z</updated>
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<title type='html'>Proof-of-principle investigation of an algorithmic model of adenosine-mediated angiogenesis.</title>
<summary type='html'>F J Azuaje, F Léonard, M Rolland-Turner, Y Devaux, D R Wagner. (2011)  &lt;i&gt;Theoretical Biology and Medical Modelling&lt;/i&gt; 8: 7 &lt;br/&gt;</summary>
</entry>
<entry>
<id>http://publicationslist.org/fj.azuaje/refid158</id>
<updated>2011-04-17T11:38:21Z</updated>
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<title type='html'>Predictive integration of gene functional similarity and co-expression defines treatment response of endothelial progenitor cells</title>
<summary type='html'>Azuaje FJ, Wang H,  Zheng H, Léonard F, Rolland-Turner M, Zhang L, Devaux Y, Wagner DR. (2011)  &lt;i&gt;BMC Systems Biology&lt;/i&gt; 5: 46 &lt;br/&gt;</summary>
</entry>
<entry>
<id>http://publicationslist.org/fj.azuaje/refid161</id>
<updated>2011-03-30T10:16:31Z</updated>
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<title type='html'>Integration of transcriptional and ontology-based functional similarity information for phenotypic characterisation.</title>
<summary type='html'>Azuaje F, Wang H, Zheng H, Léonard F, Rolland-Turner M et al. (2011)  &lt;i&gt; In Proc. of Enabling Systems Biology Conference, London, UK, 11-14 April, 2011.&lt;/i&gt;&lt;br/&gt;</summary>
</entry>
<entry>
<id>http://publicationslist.org/fj.azuaje/refid157</id>
<updated>2011-07-20T18:43:58Z</updated>
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<title type='html'>Systems-based biological concordance and predictive reproducibility of gene set discovery methods in cardiovascular disease. </title>
<summary type='html'>Azuaje F, Zheng H, Camargo A, Wang H. (2011)  &lt;i&gt;Journal of Biomedical Informatics&lt;/i&gt; 44:  637–647&lt;br/&gt;</summary>
</entry>
<entry>
<id>http://publicationslist.org/fj.azuaje/refid155</id>
<updated>2011-01-31T08:39:53Z</updated>
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<title type='html'>Prognostic transcriptional association networks: A new supervised approach based on regression trees
</title>
<summary type='html'>Nepomuceno I, Azuaje F, Devaux Y, Nazarov P, Muller A, Aguilar-Ruiz J, Wagner D. (2011)  &lt;i&gt;Bioinformatics&lt;/i&gt; 27:  252-258 (First published online: November 21, 2010)&lt;br/&gt;</summary>
</entry>
<entry>
<id>http://publicationslist.org/fj.azuaje/refid147</id>
<updated>2011-01-31T08:38:36Z</updated>
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<title type='html'>Computational discrete models of tissue growth and regeneration</title>
<summary type='html'>Azuaje F (2011)  &lt;i&gt;Briefings in Bioinformatics&lt;/i&gt; 12:  64-77 (Advance Access published on May 30, 2010)&lt;br/&gt;</summary>
</entry>
<entry>
<id>http://publicationslist.org/fj.azuaje/refid154</id>
<updated>2010-12-22T12:30:48Z</updated>
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<title type='html'>Why is it so difficult to data mine relevant genome-scale biomarkers?, </title>
<summary type='html'>Azuaje F,  (2011)  &lt;i&gt;Expert Opinion On Medical Diagnostics&lt;/i&gt; 5:  1-4&lt;br/&gt;</summary>
</entry>
<entry>
<id>http://publicationslist.org/fj.azuaje/refid162</id>
<updated>2011-05-02T14:46:21Z</updated>
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<title type='html'>An information theoretic approach to assessing Gene Ontology-driven similarity and its application. </title>
<summary type='html'>Wang H, Zheng H, Azuaje F (2011)  &lt;i&gt;International Journal of Data Mining and Bioinformatics. 2011.&lt;/i&gt; :  in press.&lt;br/&gt;</summary>
</entry>
<entry>
<id>http://publicationslist.org/fj.azuaje/refid156</id>
<updated>2010-11-29T10:00:33Z</updated>
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<title type='html'>Combined analysis of microRNA and messenger RNA profiles identifies miR-16 as a potential regulator of the proliferation of endothelial progenitor cells</title>
<summary type='html'>Rolland-Turner M, Goretti E, Léonard F, Zhang L, Nicolas C, Jeanty C, Azuaje F, Wagner DR, Devaux Y (2011)  &lt;i&gt;Proceedings of The 6th annual European Heart Failure Winter Research Meeting of the Heart Failure Association of the European Society of Cardiology (ESC), Les Diablerets, Switzerland, 26-29 January 2011&lt;/i&gt;&lt;br/&gt;</summary>
</entry>
<entry>
<id>http://publicationslist.org/fj.azuaje/refid160</id>
<updated>2011-03-30T10:14:43Z</updated>
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<title type='html'>Low levels of vascular endothelial growth factor B predict late remodelling after myocardial infarction</title>
<summary type='html'>Devaux Yvan, Squire IB, Vausort M, Azuaje F, et al. (2011)  &lt;i&gt;In Proc. of ESC Heart Failure meeting, Gothenburg, Sweden, 21-24 May 2011.&lt;/i&gt;&lt;br/&gt;</summary>
</entry>
<entry>
<id>http://publicationslist.org/fj.azuaje/refid168</id>
<updated>2011-08-25T13:38:34Z</updated>
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<title type='html'>Matrix metalloproteinase 9 polymorphism and outcome after myocardial infarction. </title>
<summary type='html'>Rodius S, Mulliert G, Azuaje F, Devaux, Y, Wagner D.  (2011)  &lt;i&gt;Cardiogenetics&lt;/i&gt; 1: e5 &lt;br/&gt;</summary>
</entry>
<entry>
<id>http://publicationslist.org/fj.azuaje/refid163</id>
<updated>2011-05-11T08:54:49Z</updated>
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<title type='html'>Systems-level inference and dissection of drug-target interaction networks</title>
<summary type='html'>Azuaje F, Zhang L, Wagner DR, Devaux Y. (2011)  &lt;i&gt;In Proc. of ISMB/ECCB 2011, Vienna, Austria, 17-19 July, 2011.&lt;/i&gt;&lt;br/&gt;</summary>
</entry>
<entry>
<id>http://publicationslist.org/fj.azuaje/refid170</id>
<updated>2012-01-18T09:08:40Z</updated>
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<title type='html'>Gene set analysis in the cloud. </title>
<summary type='html'>Zhang L, Gu S, Wang B, Liu Y, Azuaje F.

 (2011)  &lt;i&gt;Bioinformatics&lt;/i&gt; 28:  294-295&lt;br/&gt;</summary>
</entry>
<entry>
<id>http://publicationslist.org/fj.azuaje/refid171</id>
<updated>2011-12-15T08:33:43Z</updated>
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<title type='html'>Transforming growth factor beta receptor 1 is a new candidate prognostic biomarker after acute myocardial infarction. </title>
<summary type='html'>Devaux Y, Bousquenaud M, Rodius S, Marie PY, Maskali F, Zhang L, Azuaje F, Wagner DR. (2011)  &lt;i&gt;BMC Medical Genomics&lt;/i&gt; 4: 83 &lt;br/&gt;</summary>
</entry>
<entry>
<id>http://publicationslist.org/fj.azuaje/refid167</id>
<updated>2011-10-27T07:53:13Z</updated>
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<title type='html'>Assessment of procalcitonin to predict outcome in hypothermia treated patients after cardiac arrest, </title>
<summary type='html'>Stammet P, Devaux Y, Azuaje F, Werer C, Lorang C, Gilson G, Max M.  (2011)  &lt;i&gt;Critical Care Research and Practice&lt;/i&gt; 2011,:  Article ID 631062 &lt;br/&gt;</summary>
</entry>
<entry>
<id>http://publicationslist.org/fj.azuaje/refid169</id>
<updated>2011-09-23T11:33:06Z</updated>
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<title type='html'>A drug-target interaction network enables inference of adverse cardiovascular events of non-cardiovascular drugs. </title>
<summary type='html'>Azuaje F, Zhang L, Wagner DR, Devaux Y. (2011)  &lt;i&gt;4th RECOMB Conference on Regulatory Genomics, Systems Biology, and DREAM Challenges, Barcelona, Spain,14-19 October 2011.&lt;/i&gt;&lt;br/&gt;</summary>
</entry>
<entry>
<id>http://publicationslist.org/fj.azuaje/refid166</id>
<updated>2011-07-15T10:19:46Z</updated>
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<title type='html'>Information encoded in a network of inflammation proteins predicts clinical outcome after myocardial infarction.</title>
<summary type='html'>Azuaje F, Rodius S, Zhang L, Devaux Y, Wagner DR. (2011)  &lt;i&gt;BMC Medical Genomics&lt;/i&gt; 4: 59 &lt;br/&gt;</summary>
</entry>
<entry>
<id>http://publicationslist.org/fj.azuaje/refid164</id>
<updated>2011-06-07T08:31:21Z</updated>
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<title type='html'>Incorporation of ontology-driven biological knowledge into cardiovascular genomics.</title>
<summary type='html'>Zheng H, Wang H, Azuaje F.  (2011)  &lt;i&gt;Proc. of Computing in Cardiology 2011 (CinC2011)&lt;/i&gt; &lt;br/&gt;</summary>
</entry>
<entry>
<id>http://publicationslist.org/fj.azuaje/refid165</id>
<updated>2011-08-25T13:40:43Z</updated>
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<title type='html'>Drug-target network in myocardial infarction reveals multiple side effects of unrelated drugs

</title>
<summary type='html'>Azuaje FJ, Zhang L, Devaux Y, Wagner DR. (2011)  &lt;i&gt;Nature's Scientific Reports&lt;/i&gt; 1: 52 &lt;br/&gt;</summary>
</entry>
<entry>
<id>http://publicationslist.org/fj.azuaje/refid143</id>
<updated>2010-03-10T09:29:37Z</updated>
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<title type='html'>Vascular endothelial growth factor –B is associated with outcome after myocardial infarction</title>
<summary type='html'>Devaux Y, Yvorra C, Azuaje F, Vausort M, Kelly D, Ng LL, Squire IB, Wagner DR (2010)  &lt;i&gt;in Proc. of Heart Failure Winter Research Meeting 2010, Les Diablerets, Switzerland, 27-30 January 2010.&lt;/i&gt;&lt;br/&gt;</summary>
</entry>
<entry>
<id>http://publicationslist.org/fj.azuaje/refid142</id>
<updated>2010-03-10T09:28:20Z</updated>
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<title type='html'>Association between vascular endothelial growth factor –B and outcome after myocardial infarction

</title>
<summary type='html'>Devaux Y, Yvorra C, Azuaje F, Vausort M, Kelly D, Ng LL, Squire IB, Wagner DR (2010)  &lt;i&gt;in Proc. of European Society of Cardiology (ESC) Heart Failure Congress 2010, 29 May – 1 June, 2010, Berlin, Germany.&lt;/i&gt;&lt;br/&gt;</summary>
</entry>
<entry>
<id>http://publicationslist.org/fj.azuaje/refid141</id>
<updated>2010-03-15T15:04:47Z</updated>
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<title type='html'> Integrative pathway-centric modeling of ventricular dysfunction after myocardial infarction </title>
<summary type='html'>Azuaje F, Devaux Y, Wagner D (2010)  &lt;i&gt;PLoS ONE&lt;/i&gt; 5(3): e9661:  &lt;br/&gt;</summary>
</entry>
<entry>
<id>http://publicationslist.org/fj.azuaje/refid138</id>
<updated>2010-03-11T13:08:28Z</updated>
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<title type='html'>A knowledge-driven probabilistic framework for the prediction of protein-protein interaction networks</title>
<summary type='html'>Browne F, Wang H, Zheng H, Azuaje F (2010)  &lt;i&gt;Computers in Biology and Medicine&lt;/i&gt; 40:  306-317&lt;br/&gt;</summary>
</entry>
<entry>
<id>http://publicationslist.org/fj.azuaje/refid118</id>
<updated>2011-07-09T14:19:23Z</updated>
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<title type='html'>Bioinformatics and biomarker discovery: “Omic” data analysis for personalised medicine</title>
<summary type='html'>Azuaje F (2010)  :&lt;br/&gt;</summary>
</entry>
<entry>
<id>http://publicationslist.org/fj.azuaje/refid139</id>
<updated>2010-04-08T14:10:10Z</updated>
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<title type='html'>From experimental approaches to computational techniques: a review on the prediction of protein-protein interactions</title>
<summary type='html'>Browne F, Zheng H, Wang H, Azuaje F (2010)  &lt;i&gt;Advances in Artificial Intelligence&lt;/i&gt; 2010:  &lt;br/&gt;</summary>
</entry>
<entry>
<id>http://publicationslist.org/fj.azuaje/refid140</id>
<updated>2010-03-10T09:25:04Z</updated>
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<title type='html'>Identification of potential targets in biological signalling systems through network-based perturbation analysis</title>
<summary type='html'>Azuaje F, Devaux Y, Wagner D (2010)  &lt;i&gt;BioSystems&lt;/i&gt; 100:  55–64&lt;br/&gt;</summary>
</entry>
<entry>
<id>http://publicationslist.org/fj.azuaje/refid137</id>
<updated>2010-01-05T13:38:54Z</updated>
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<title type='html'>What does systems biology mean for biomarker discovery?</title>
<summary type='html'>Azuaje F (2010)  &lt;i&gt;Expert Opinion on Medical Diagnostics&lt;/i&gt; 4:  1-10&lt;br/&gt;</summary>
</entry>
<entry>
<id>http://publicationslist.org/fj.azuaje/refid150</id>
<updated>2010-08-10T12:21:04Z</updated>
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<title type='html'>Multi-level integrative analysis of protein-protein interaction networks: Connecting completeness, depth and robustness</title>
<summary type='html'>Blayney J, Wang H, Zheng H, Azuaje F (2010)  &lt;i&gt;Int. J. Computational Biology and Drug Design&lt;/i&gt; 3:  31-51&lt;br/&gt;</summary>
</entry>
<entry>
<id>http://publicationslist.org/fj.azuaje/refid153</id>
<updated>2010-10-04T13:12:14Z</updated>
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<title type='html'>seGOsa: Software Environment for Gene Ontology-driven Similarity Assessment</title>
<summary type='html'>Zheng H, Azuaje F, Wang H (2010)  &lt;i&gt;Proc. of IEEE International Conference on Bioinformatics &amp; Biomedicine (BIBM 2010)&lt;/i&gt; &lt;br/&gt;</summary>
</entry>
<entry>
<id>http://publicationslist.org/fj.azuaje/refid152</id>
<updated>2011-05-02T14:43:36Z</updated>
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<title type='html'> eNelator: a simulation system for large-scale vulnerability analysis of species-, disease- and process-specific protein networks. </title>
<summary type='html'>Zheng H, Wang H, Azuaje F, (2010)  &lt;i&gt;Journal of Computational Science&lt;/i&gt; 1:  197-205&lt;br/&gt;</summary>
</entry>
<entry>
<id>http://publicationslist.org/fj.azuaje/refid149</id>
<updated>2010-09-07T08:13:49Z</updated>
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<title type='html'>Transcriptional networks characterize ventricular dysfunction after myocardial infarction: A proof-of-concept investigation</title>
<summary type='html'>Azuaje F, Devaux Y, Vausort M, Yvorra C, Wagner D,  (2010)  &lt;i&gt;Journal of Biomedical Informatics&lt;/i&gt; 43:  812–819&lt;br/&gt;</summary>
</entry>
<entry>
<id>http://publicationslist.org/fj.azuaje/refid151</id>
<updated>2010-10-08T08:35:17Z</updated>
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<title type='html'>Ontology- and graph-based similarity assessment in biological networks</title>
<summary type='html'>Wang H, Zheng H, Azuaje F (2010)  &lt;i&gt;Bioinformatics&lt;/i&gt; 26:  2643-2644&lt;br/&gt;</summary>
</entry>
<entry>
<id>http://publicationslist.org/fj.azuaje/refid148</id>
<updated>2010-05-25T14:55:59Z</updated>
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<title type='html'>Coordinated modular functionality and prognostic potential of a heart failure biomarker-driven interaction network</title>
<summary type='html'>Azuaje F, Devaux Y, Wagner D (2010)  &lt;i&gt;BMC Systems Biology&lt;/i&gt; 4: 60 &lt;br/&gt;</summary>
</entry>
<entry>
<id>http://publicationslist.org/fj.azuaje/refid145</id>
<updated>2010-09-22T13:25:49Z</updated>
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<title type='html'> Integrated protein network and microarray analysis to identify potential biomarkers after myocardial infarction. </title>
<summary type='html'>Devaux Y, Azuaje F, Vausort M, Yvorra C, Wagner D (2010)  &lt;i&gt;Functional &amp; Integrative Genomics&lt;/i&gt; 43:  : 812–819&lt;br/&gt;</summary>
</entry>
<entry>
<id>http://publicationslist.org/fj.azuaje/refid146</id>
<updated>2010-09-07T08:12:04Z</updated>
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<title type='html'>Integration of Gene Ontology-based Similarities for Supporting Analysis of Protein-Protein Interaction Networks</title>
<summary type='html'>Wang H, Zheng H, Browne F, Glass D, Azuaje F, (2010)  &lt;i&gt;Pattern Recognition Letters&lt;/i&gt; 31:  2073-2082&lt;br/&gt;</summary>
</entry>
<entry>
<id>http://publicationslist.org/fj.azuaje/refid127</id>
<updated>2009-11-08T17:16:11Z</updated>
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<title type='html'>Assessing the impact of network depth on the analysis of PPI networks: A case study</title>
<summary type='html'>Blayney J, Wang H, Zheng H, Azuaje F (2009)  &lt;i&gt;Proc. of 2009 IEEE Symposium on Computational Intelligence in Bioinformatics and Computational Biology&lt;/i&gt; 200-207&lt;br/&gt;</summary>
</entry>
<entry>
<id>http://publicationslist.org/fj.azuaje/refid128</id>
<updated>2008-12-29T11:07:43Z</updated>
<link rel='alternate' type='text/html' href='http://publicationslist.org/fj.azuaje#refid128'/>
<title type='html'>Transcriptional regulatory networks specify clinical outcome after myocardial infarction</title>
<summary type='html'>Azuaje F, Devaux Y, Yvorra C, Vausort M, Jeanty C, Wagner D (2009)  &lt;i&gt;Proc. of 2009 AMIA Summit on Translational Bioinformatics, 15-17 March 2009, San Francisco, USA.&lt;/i&gt;&lt;br/&gt;</summary>
</entry>
<entry>
<id>http://publicationslist.org/fj.azuaje/refid126</id>
<updated>2009-11-08T17:12:59Z</updated>
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<title type='html'>Machine learning techniques for the automated classification of adhesin-like proteins in the human protozoan parasite Trypanosoma cruzi</title>
<summary type='html'>Gonzalez A, Azuaje F, Da Silveira J, Ramirez, J, Dorronsoro J ( 2009)  &lt;i&gt;IEEE/ACM Trans. on Computational Biology and Bioinformatics&lt;/i&gt; 6:  695-702&lt;br/&gt;</summary>
</entry>
<entry>
<id>http://publicationslist.org/fj.azuaje/refid144</id>
<updated>2010-03-10T09:32:59Z</updated>
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<title type='html'>Supervised prediction of heart failure through transcriptional association networks</title>
<summary type='html'>Nepomuceno I, Azuaje F, Nazarov PV, Muller A, Devaux Y, Vallar L, Aguilar-Ruiz JS, and Wagner DR (2009)  &lt;i&gt;in Proc. of BBC09, the fifth Benelux Bioinformatics Conference, Liège, Belgium, 14-15 December 2009, p. 23.&lt;/i&gt;&lt;br/&gt;</summary>
</entry>
<entry>
<id>http://publicationslist.org/fj.azuaje/refid129</id>
<updated>2008-12-29T11:09:10Z</updated>
<link rel='alternate' type='text/html' href='http://publicationslist.org/fj.azuaje#refid129'/>
<title type='html'> Prediction of heart failure after myocardial infarction through integrative bioinformatics  </title>
<summary type='html'>Devaux Y, Azuaje F, Yvorra C, Vausort M, Jeanty C, Wagner D (2009)  &lt;i&gt;Proc. of 2009 AMIA Summit on Translational Bioinformatics, 15-17 March 2009, San Francisco, USA.&lt;/i&gt;&lt;br/&gt;</summary>
</entry>
<entry>
<id>http://publicationslist.org/fj.azuaje/refid125</id>
<updated>2009-05-29T08:47:43Z</updated>
<link rel='alternate' type='text/html' href='http://publicationslist.org/fj.azuaje#refid125'/>
<title type='html'>Challenges and standards in reporting diagnostic and prognostic biomarker studies</title>
<summary type='html'>Azuaje F, Devaux Y, Wagner D (2009)  &lt;i&gt;CTS Clinical and Translational Science&lt;/i&gt; 2:  156 - 161&lt;br/&gt;</summary>
</entry>
<entry>
<id>http://publicationslist.org/fj.azuaje/refid131</id>
<updated>2009-11-08T17:19:17Z</updated>
<link rel='alternate' type='text/html' href='http://publicationslist.org/fj.azuaje#refid131'/>
<title type='html'>Computational biology for cardiovascular biomarker discovery</title>
<summary type='html'>Azuaje F, Devaux Y, Wagner D (2009)  &lt;i&gt;Briefings in Bioinformatics&lt;/i&gt; 10:  367-377&lt;br/&gt;</summary>
</entry>
<entry>
<id>http://publicationslist.org/fj.azuaje/refid130</id>
<updated>2009-01-26T13:02:13Z</updated>
<link rel='alternate' type='text/html' href='http://publicationslist.org/fj.azuaje#refid130'/>
<title type='html'>GRIP: A web-based system for constructing Gold Standard datasets for protein-protein interaction prediction</title>
<summary type='html'>Fiona Browne, Haiying Wang, Huiru Zheng, Francisco Azuaje (2009)  &lt;i&gt;Source Code for Biology and Medicine 2009&lt;/i&gt; 4: 2 &lt;br/&gt;</summary>
</entry>
<entry>
<id>http://publicationslist.org/fj.azuaje/refid136</id>
<updated>2009-06-04T07:17:34Z</updated>
<link rel='alternate' type='text/html' href='http://publicationslist.org/fj.azuaje#refid136'/>
<title type='html'>Prediction of heart failure after myocardial infarction through integrative bioinformatics</title>
<summary type='html'>Devaux Y, Azuaje F, Yvorra C, Vausort M, Jeanty C, Wagner D (2009)  &lt;i&gt; in Proc. of the Heart Failure Congress 2009, Nice, France, 29 May-2 June 2009, p. 914.&lt;/i&gt;&lt;br/&gt;</summary>
</entry>
<entry>
<id>http://publicationslist.org/fj.azuaje/refid134</id>
<updated>2009-11-08T17:15:31Z</updated>
<link rel='alternate' type='text/html' href='http://publicationslist.org/fj.azuaje#refid134'/>
<title type='html'>A Standard-Compliant Global Map of the Bile Acid/Xenobiotic Signalling Network: Construction and Automated Query Processing</title>
<summary type='html'>Schmidt O, Lopez J, Azuaje F, Thompson P, Swain M, Dubitzky D (2009)  &lt;i&gt;Proc. of the 2009 International Conference on Bioinformatics and Computational Biology (BIOCOMP'09)&lt;/i&gt; 657-663&lt;br/&gt;</summary>
</entry>
<entry>
<id>http://publicationslist.org/fj.azuaje/refid135</id>
<updated>2009-11-08T17:17:48Z</updated>
<link rel='alternate' type='text/html' href='http://publicationslist.org/fj.azuaje#refid135'/>
<title type='html'>Assessing the Most Effective Depth for PPI Analysis</title>
<summary type='html'>Blayney J, Wang H, Zheng H, Azuaje F (2009)  &lt;i&gt;Proc. 2009 International Joint Conferences on System Biology, Bioinformatics and Intelligent Computing (IJCBS09)&lt;/i&gt; 286-292&lt;br/&gt;</summary>
</entry>
<entry>
<id>http://publicationslist.org/fj.azuaje/refid133</id>
<updated>2009-11-08T17:17:08Z</updated>
<link rel='alternate' type='text/html' href='http://publicationslist.org/fj.azuaje#refid133'/>
<title type='html'>An integrative Bayesian approach to supporting the prediction of protein-protein interaction networks</title>
<summary type='html'>Browne F, Zheng H, Wang H, Azuaje F (2009)  &lt;i&gt;Proceedings of World  Academy of Science, Engineering and  Technology, WASET International Conference on Bioinformatics and Bioengineering&lt;/i&gt; &lt;br/&gt;</summary>
</entry>
<entry>
<id>http://publicationslist.org/fj.azuaje/refid116</id>
<updated>2009-03-04T10:05:38Z</updated>
<link rel='alternate' type='text/html' href='http://publicationslist.org/fj.azuaje#refid116'/>
<title type='html'>Innovative Methods in Assessing Political Risk for Business Internationalization</title>
<summary type='html'>Rios-Morales R, Gamberger D, Šmuc T, Azuaje F (2009)  &lt;i&gt;Research in International Business and Finance&lt;/i&gt; 23 : 2 144-156&lt;br/&gt;</summary>
</entry>
<entry>
<id>http://publicationslist.org/fj.azuaje/refid132</id>
<updated>2009-02-04T22:54:46Z</updated>
<link rel='alternate' type='text/html' href='http://publicationslist.org/fj.azuaje#refid132'/>
<title type='html'>Impact of PPI Network Depth and Node Classification on the Identification of Biologically Relevant Targets - A Case Study</title>
<summary type='html'>Blayney JK, Wang H, Zheng H, Azuaje F (2009)  &lt;i&gt;Proc. of Conference on Synthetic Biology, Systems Biology and Bioinformatics (BioSysBio 2009), Cambridge, UK,  23 - 25 March 2009.&lt;/i&gt;&lt;br/&gt;</summary>
</entry>
<entry>
<id>http://publicationslist.org/fj.azuaje/refid31</id>
<updated>2008-07-18T08:16:23Z</updated>
<link rel='alternate' type='text/html' href='http://publicationslist.org/fj.azuaje#refid31'/>
<title type='html'>Clustering-based Approaches to SAGE Data Mining</title>
<summary type='html'>Wang H, Zheng H, Azuaje F (2008)  &lt;i&gt;BioData Mining,&lt;/i&gt; 1:5:  &lt;br/&gt;</summary>
</entry>
<entry>
<id>http://publicationslist.org/fj.azuaje/refid32</id>
<updated>2008-12-17T21:00:22Z</updated>
<link rel='alternate' type='text/html' href='http://publicationslist.org/fj.azuaje#refid32'/>
<title type='html'>Computational prediction of protein interaction networks through supervised classification techniques</title>
<summary type='html'>Browne F, Wang H, Zheng H and Azuaje  (2008)  &lt;i&gt;International Journal of Functional Informatics and Personalised Medicine&lt;/i&gt; 1: 2 205-221&lt;br/&gt;</summary>
</entry>
<entry>
<id>http://publicationslist.org/fj.azuaje/refid47</id>
<updated>2008-05-05T11:24:10Z</updated>
<link rel='alternate' type='text/html' href='http://publicationslist.org/fj.azuaje#refid47'/>
<title type='html'>Reassessing the genomic data integration limits for the prediction of protein-protein interactions in Saccharomyces cerevisiae</title>
<summary type='html'>Browne F, Wang H, Zheng H and Azuaje F (2008)  &lt;i&gt;Proc. 2008 IEEE Symposium on Computational Intelligence in Bioinformatics and Computational Biology&lt;/i&gt; &lt;br/&gt;</summary>
</entry>
<entry>
<id>http://publicationslist.org/fj.azuaje/refid1</id>
<updated>2008-05-09T13:28:34Z</updated>
<link rel='alternate' type='text/html' href='http://publicationslist.org/fj.azuaje#refid1'/>
<title type='html'>Special section on machine intelligence approaches to systems biology.</title>
<summary type='html'>The three papers in this special section focus on machine intelligence approaches to systems biology.&lt;br/&gt;&lt;br/&gt;G B Fogel, E Bullinger, S F Su, F Azuaje (2008)  &lt;i&gt;IEEE Transactions on Systems, Man, and Cybernetics, Part B, Vol. 38 (1),  pp. 2 – 4.&lt;/i&gt;&lt;br/&gt;</summary>
</entry>
<entry>
<id>http://publicationslist.org/fj.azuaje/refid86</id>
<updated>2008-11-16T17:47:16Z</updated>
<link rel='alternate' type='text/html' href='http://publicationslist.org/fj.azuaje#refid86'/>
<title type='html'>Identification of dilated cardiomyopathy signature genes through gene expression and network data integration</title>
<summary type='html'>Camargo A, Azuaje F   (2008)  &lt;i&gt;Genomics&lt;/i&gt;  92 :  404−413&lt;br/&gt;</summary>
</entry>
<entry>
<id>http://publicationslist.org/fj.azuaje/refid33</id>
<updated>2008-07-21T08:41:18Z</updated>
<link rel='alternate' type='text/html' href='http://publicationslist.org/fj.azuaje#refid33'/>
<title type='html'>Improving pattern discovery and visualization of SAGE data through Poisson-based self-adaptive neural networks

</title>
<summary type='html'>Zheng H, Wang H, Azuaje F (2008)  &lt;i&gt;IEEE Transactions on Information Technology in Biomedicine&lt;/i&gt; 12: 4 459-46&lt;br/&gt;</summary>
</entry>
<entry>
<id>http://publicationslist.org/fj.azuaje/refid123</id>
<updated>2008-09-25T11:57:16Z</updated>
<link rel='alternate' type='text/html' href='http://publicationslist.org/fj.azuaje#refid123'/>
<title type='html'>Nature’s Journal Club, comment on “Parasites lead to evolution of robustness against gene loss in host signaling networks”</title>
<summary type='html'>Azuaje F (2008)  &lt;i&gt;Nature, 455, p. 435,&lt;/i&gt;&lt;br/&gt;</summary>
</entry>
<entry>
<id>http://publicationslist.org/fj.azuaje/refid121</id>
<updated>2008-08-27T14:27:37Z</updated>
<link rel='alternate' type='text/html' href='http://publicationslist.org/fj.azuaje#refid121'/>
<title type='html'>Integrated network and microarray analysis to identify new biomarkers of heart failure after myocardial infarction</title>
<summary type='html'>Devaux Y, Yvorra C, Vausort M, Azuaje F, Wagner D (2008)  &lt;i&gt;Proceedings of The 13th Annual Meeting of the European Council for Cardiovascular Research&lt;/i&gt;&lt;br/&gt;</summary>
</entry>
<entry>
<id>http://publicationslist.org/fj.azuaje/refid124</id>
<updated>2008-12-17T21:04:29Z</updated>
<link rel='alternate' type='text/html' href='http://publicationslist.org/fj.azuaje#refid124'/>
<title type='html'>Permutation-based statistical tests for multiple hypotheses</title>
<summary type='html'>Camargo A, Azuaje F, Wang H, Zheng H (2008)  &lt;i&gt;Source Code for Biology and Medicine&lt;/i&gt; 3: 15 &lt;br/&gt;</summary>
</entry>
<entry>
<id>http://publicationslist.org/fj.azuaje/refid122</id>
<updated>2008-08-27T14:28:52Z</updated>
<link rel='alternate' type='text/html' href='http://publicationslist.org/fj.azuaje#refid122'/>
<title type='html'>Integration of genetic polymorphisms to predict ventricular function after myocardial infarction</title>
<summary type='html'>Ernens I, Berrahmoune H, Azuaje F, Vausort M, Visvikis-Siest S, Devaux Y, Wagner D (2008)  &lt;i&gt;Proceedings of The 13th Annual Meeting of the European Council for Cardiovascular Research (ECCR)&lt;/i&gt;&lt;br/&gt;</summary>
</entry>
<entry>
<id>http://publicationslist.org/fj.azuaje/refid120</id>
<updated>2008-08-27T11:22:23Z</updated>
<link rel='alternate' type='text/html' href='http://publicationslist.org/fj.azuaje#refid120'/>
<title type='html'>Knowledge-driven data integration for the prediction of protein-protein interactions networks</title>
<summary type='html'>Browne F, Zheng H, Wang H, Azuaje F (2008)  &lt;i&gt;Proceedings of 2nd International Workshop on Systems Biology, August 17-20, 2008, Maynooth, Ireland.&lt;/i&gt;&lt;br/&gt;</summary>
</entry>
<entry>
<id>http://publicationslist.org/fj.azuaje/refid119</id>
<updated>2008-11-14T13:46:15Z</updated>
<link rel='alternate' type='text/html' href='http://publicationslist.org/fj.azuaje#refid119'/>
<title type='html'> Integrated network and microarray analysis to identify new biomarkers of heart failure after myocardial infarction</title>
<summary type='html'>Devaux Y, Yvorra C, Vausort M, Jeanty C, Azuaje F, Wagner D, (2008)  &lt;i&gt;Circulation. 118: S_864-S_865, 2008&lt;/i&gt;&lt;br/&gt;</summary>
</entry>
<entry>
<id>http://publicationslist.org/fj.azuaje/refid117</id>
<updated>2008-06-27T13:17:34Z</updated>
<link rel='alternate' type='text/html' href='http://publicationslist.org/fj.azuaje#refid117'/>
<title type='html'>Knowledge-driven data integration for the prediction of protein-protein interaction networks</title>
<summary type='html'>Zheng H, Browne F, Wang H, Azuaje F (2008)  &lt;i&gt; ISMB 2008, Toronto, Canada.&lt;/i&gt;&lt;br/&gt;</summary>
</entry>
<entry>
<id>http://publicationslist.org/fj.azuaje/refid92</id>
<updated>2008-05-09T13:09:20Z</updated>
<link rel='alternate' type='text/html' href='http://publicationslist.org/fj.azuaje#refid92'/>
<title type='html'>From genes to complex networks in the post-genome era</title>
<summary type='html'>Azuaje F (2007)  &lt;i&gt;Proc. of IUPAC/OPCW International Workshop, The Impact of Advances in Science and Technology on the Chemical Weapons Convention, April 22-27, 2007, ISBN 978-953-6894-30-7,  pp. 25 – 28, and in journal Pure and Applied Chemistry&lt;/i&gt;&lt;br/&gt;</summary>
</entry>
<entry>
<id>http://publicationslist.org/fj.azuaje/refid93</id>
<updated>2008-05-09T13:10:36Z</updated>
<link rel='alternate' type='text/html' href='http://publicationslist.org/fj.azuaje#refid93'/>
<title type='html'>Integration and analysis of heterogeneous microarray data sources for supporting drug target identification in atherosclerosis</title>
<summary type='html'> (2007)  &lt;i&gt;in Proc. of Systems Biology, Bioinformatics and Synthetic Biology Conference (BioSysBio), Manchester, January 11-13, 2007, and in BMC Systems Biology, 1 (Suppl. 1): P9&lt;/i&gt;&lt;br/&gt;</summary>
</entry>
<entry>
<id>http://publicationslist.org/fj.azuaje/refid6</id>
<updated>2008-04-30T21:12:47Z</updated>
<link rel='alternate' type='text/html' href='http://publicationslist.org/fj.azuaje#refid6'/>
<title type='html'>An exploration of the genetic robustness landscape of surface protein families in the human protozoan parasite Trypanosoma cruzi.</title>
<summary type='html'>The ability of genes to be robust to mutations at the codon level has been suggested as a key factor for understanding adaptation features. It has been proposed that genes relevant to host-parasite interactions will tend to exhibit high volatility or &quot;antirobust&quot; patterns, which may be related to the capacity of the parasite to evade the host immune system. We compared two superfamilies of surface...&lt;br/&gt;&lt;br/&gt;Francisco Azuaje, José Luis Ramirez, José Franco Da Silveira (2007)  &lt;i&gt;IEEE Trans Nanobioscience&lt;/i&gt; &lt;i&gt;&lt;/i&gt; &lt;i&gt;&lt;/i&gt; 6: 3 223-228&lt;br/&gt;</summary>
</entry>
<entry>
<id>http://publicationslist.org/fj.azuaje/refid48</id>
<updated>2008-05-05T11:25:34Z</updated>
<link rel='alternate' type='text/html' href='http://publicationslist.org/fj.azuaje#refid48'/>
<title type='html'>Identification of dilated cardiomyopathy signature genes through gene expression and network data integration</title>
<summary type='html'>Camargo A, Azuaje F (2007)  &lt;i&gt;Proceedings of CAMDA 2007&lt;/i&gt; &lt;br/&gt;</summary>
</entry>
<entry>
<id>http://publicationslist.org/fj.azuaje/refid8</id>
<updated>2008-04-30T21:12:47Z</updated>
<link rel='alternate' type='text/html' href='http://publicationslist.org/fj.azuaje#refid8'/>
<title type='html'>Poisson-based self-organizing feature maps and hierarchical clustering for serial analysis of gene expression data.</title>
<summary type='html'>Serial analysis of gene expression (SAGE) is a powerful technique for global gene expression profiling, allowing simultaneous analysis of thousands of transcripts without prior structural and functional knowledge. Pattern discovery and visualization have become fundamental approaches to analyzing such large-scale gene expression data. From the pattern discovery perspective, clustering techniques h...&lt;br/&gt;&lt;br/&gt;Haiying Wang, Huiru Zheng, Francisco Azuaje (2007)  &lt;i&gt;IEEE/ACM Trans Comput Biol Bioinform&lt;/i&gt; &lt;i&gt;&lt;/i&gt; &lt;i&gt;&lt;/i&gt; 4: 2 163-175&lt;br/&gt;</summary>
</entry>
<entry>
<id>http://publicationslist.org/fj.azuaje/refid5</id>
<updated>2008-04-30T21:12:47Z</updated>
<link rel='alternate' type='text/html' href='http://publicationslist.org/fj.azuaje#refid5'/>
<title type='html'>Inferring adaptive regulation thresholds and association rules from gene expression data through combinatorial optimization learning.</title>
<summary type='html'>There is a need to design computational methods to support the prediction of gene regulatory networks. Such models should offer both biologically-meaningful and computationally-accurate predictions, which in combination with other techniques may improve large-scale, integrative studies. This paper presents a new machine learning method for the prediction of putative regulatory associations from ex...&lt;br/&gt;&lt;br/&gt;Ignacio Ponzoni, Francisco Azuaje, Juan Augusto, David Glass (2007)  &lt;i&gt;IEEE/ACM Trans Comput Biol Bioinform&lt;/i&gt; &lt;i&gt;&lt;/i&gt; &lt;i&gt;&lt;/i&gt; 4: 4 624-634&lt;br/&gt;</summary>
</entry>
<entry>
<id>http://publicationslist.org/fj.azuaje/refid7</id>
<updated>2008-04-30T21:12:47Z</updated>
<link rel='alternate' type='text/html' href='http://publicationslist.org/fj.azuaje#refid7'/>
<title type='html'>In silico, biologically-inspired modelling of genomic variation generation in surface proteins of Trypanosoma cruzi.</title>
<summary type='html'>BACKGROUND: Protozoan parasites improve the likelihood of invading or adapting to the host through their capacity to present a large repertoire of surface molecules. The understanding of the mechanisms underlying the generation of antigenic diversity is crucial to aid in the development of therapies and the study of evolution. Despite advances driven by molecular biology and genomics, there is a n...&lt;br/&gt;&lt;br/&gt;Francisco J Azuaje, Jose L Ramirez, Jose F Da Silveira (2007)  &lt;i&gt;Kinetoplastid Biol Dis&lt;/i&gt; &lt;i&gt;&lt;/i&gt; &lt;i&gt;&lt;/i&gt; 6:  &lt;br/&gt;</summary>
</entry>
<entry>
<id>http://publicationslist.org/fj.azuaje/refid49</id>
<updated>2008-05-05T11:26:49Z</updated>
<link rel='alternate' type='text/html' href='http://publicationslist.org/fj.azuaje#refid49'/>
<title type='html'>Supervised statistical and machine learning approaches to inferring pairwise and module-based protein interaction networks  </title>
<summary type='html'>Browne F, Wang H, Zheng H, Azuaje F (2007)  &lt;i&gt;Proceedings of 7th IEEE Symposium on Bioinformatics and Bioengineering (BIBE07)&lt;/i&gt; &lt;br/&gt;</summary>
</entry>
<entry>
<id>http://publicationslist.org/fj.azuaje/refid50</id>
<updated>2008-05-05T11:27:51Z</updated>
<link rel='alternate' type='text/html' href='http://publicationslist.org/fj.azuaje#refid50'/>
<title type='html'>Self-Adaptive Neural Networks Based on a Poisson Approach for Knowledge Discovery</title>
<summary type='html'>Wang H., Zheng H, and Azuaje F (2007)  &lt;i&gt; Proceedings of Twentieth International Joint Conference on Artificial Intelligence (IJCAI07)&lt;/i&gt; &lt;br/&gt;</summary>
</entry>
<entry>
<id>http://publicationslist.org/fj.azuaje/refid4</id>
<updated>2008-07-19T14:18:33Z</updated>
<link rel='alternate' type='text/html' href='http://publicationslist.org/fj.azuaje#refid4'/>
<title type='html'>Linking gene expression and functional network data in human heart failure.</title>
<summary type='html'>BACKGROUND: Gene expression profiling and the analysis of protein-protein interaction (PPI) networks may support the identification of disease bio-markers and potential drug targets. Thus, a step forward in the development of systems approaches to medicine is the integrative analysis of these data sources in specific pathological conditions. We report such an integrative bioinformatics analysis in...&lt;br/&gt;&lt;br/&gt;Anyela Camargo, Francisco Azuaje (2007)  &lt;i&gt;PLoS ONE&lt;/i&gt; 2: 12 &lt;br/&gt;</summary>
</entry>
<entry>
<id>http://publicationslist.org/fj.azuaje/refid53</id>
<updated>2008-05-06T11:00:10Z</updated>
<link rel='alternate' type='text/html' href='http://publicationslist.org/fj.azuaje#refid53'/>
<title type='html'>Semi-Supervised Clustering Models for Clinical Risk Assessment </title>
<summary type='html'>Huo Y, Azuaje F,  McCullagh P, Harper R (2006)  &lt;i&gt;Proceedings of 6th IEEE Symposium on Bioinformatics and Bioengineering (BIBE06)&lt;/i&gt; 243-250&lt;br/&gt;</summary>
</entry>
<entry>
<id>http://publicationslist.org/fj.azuaje/refid52</id>
<updated>2008-05-06T10:59:13Z</updated>
<link rel='alternate' type='text/html' href='http://publicationslist.org/fj.azuaje#refid52'/>
<title type='html'>Supervised Learning Approach to Predicting Coronary Heart Disease Complications in Type 2 Diabetes Mellitus Patients</title>
<summary type='html'>Giardina M, Azuaje F,  McCullagh P, Harper R (2006)  &lt;i&gt;Proceedings of 6th IEEE Symposium on Bioinformatics and Bioengineering (BIBE06)&lt;/i&gt; 325-331&lt;br/&gt;</summary>
</entry>
<entry>
<id>http://publicationslist.org/fj.azuaje/refid55</id>
<updated>2008-05-06T11:02:00Z</updated>
<link rel='alternate' type='text/html' href='http://publicationslist.org/fj.azuaje#refid55'/>
<title type='html'>Computational Approaches to Supporting Large-Scale Analysis of Photoreceptor-Enriched Gene Expression</title>
<summary type='html'>Wang H, Zheng H, Azuaje F (2006)  &lt;i&gt;Proc. of the 19th IEEE Symposium on Computer-Based Medical Systems&lt;/i&gt;  533-38&lt;br/&gt;</summary>
</entry>
<entry>
<id>http://publicationslist.org/fj.azuaje/refid56</id>
<updated>2008-05-06T11:02:54Z</updated>
<link rel='alternate' type='text/html' href='http://publicationslist.org/fj.azuaje#refid56'/>
<title type='html'>Incorporating biological domain knowledge into cluster validity assessment</title>
<summary type='html'>Bolshakova N, Azuaje F, Cunningham P (2006)  &lt;i&gt; Proc. of 4th European Workshop on Evolutionary Computation and Machine Learning in Bioinformatics&lt;/i&gt; 13 – 22&lt;br/&gt;</summary>
</entry>
<entry>
<id>http://publicationslist.org/fj.azuaje/refid58</id>
<updated>2008-05-06T13:52:57Z</updated>
<link rel='alternate' type='text/html' href='http://publicationslist.org/fj.azuaje#refid58'/>
<title type='html'>Integrative data mining for assessing international conflict events</title>
<summary type='html'>Azuaje F, Wang HY, Zheng H, Liu C, Wang H, Rios-Morales R, (2006)  &lt;i&gt;Proc. of 3rd IEEE International Conference on Intelligent Systems&lt;/i&gt; 483-488&lt;br/&gt;</summary>
</entry>
<entry>
<id>http://publicationslist.org/fj.azuaje/refid57</id>
<updated>2008-05-06T13:52:05Z</updated>
<link rel='alternate' type='text/html' href='http://publicationslist.org/fj.azuaje#refid57'/>
<title type='html'>The Influence of Good Governance Indicators in Political Risk Assessment: Establishing Quantitative Relationships Through Data Mining </title>
<summary type='html'>Rios-Morales R, and Azuaje F (2006)  &lt;i&gt;Proceedings of Irish Academy of Management (IAM) Annual Conference&lt;/i&gt; &lt;br/&gt;</summary>
</entry>
<entry>
<id>http://publicationslist.org/fj.azuaje/refid51</id>
<updated>2008-05-05T11:28:49Z</updated>
<link rel='alternate' type='text/html' href='http://publicationslist.org/fj.azuaje#refid51'/>
<title type='html'> Predictive integration of Gene Ontology-driven similarity and functional interactions </title>
<summary type='html'>Azuaje F, Wang H, Zheng H, Bodenreider O, Chesneau (2006)  &lt;i&gt;Proceedings of IEEE International Conference on Data Mining (ICDM) 2006, Workshop on Data Mining in Bioinformatics&lt;/i&gt; &lt;br/&gt;</summary>
</entry>
<entry>
<id>http://publicationslist.org/fj.azuaje/refid35</id>
<updated>2008-05-02T13:57:34Z</updated>
<link rel='alternate' type='text/html' href='http://publicationslist.org/fj.azuaje#refid35'/>
<title type='html'>An introduction to unsupervised learning for ECG classification</title>
<summary type='html'>Wang H, Azuaje F (2006)  &lt;i&gt;Advanced methods and tools for ECG data analysis&lt;/i&gt; 319-336&lt;br/&gt;</summary>
</entry>
<entry>
<id>http://publicationslist.org/fj.azuaje/refid11</id>
<updated>2008-04-30T21:12:47Z</updated>
<link rel='alternate' type='text/html' href='http://publicationslist.org/fj.azuaje#refid11'/>
<title type='html'>Ontology-driven approaches to analyzing data in functional genomics.</title>
<summary type='html'>Ontologies are fundamental knowledge representations that provide not only standards for annotating and indexing biological information, but also the basis for implementing functional classification and interpretation models. This chapter discusses the application of gene ontology (GO) for predictive tasks in functional genomics. It focuses on the problem of analyzing functional patterns associate...&lt;br/&gt;&lt;br/&gt;Francisco Azuaje, Fatima Al-Shahrour, Joaquin Dopazo (2006)  &lt;i&gt;Methods Mol Biol&lt;/i&gt; &lt;i&gt;&lt;/i&gt; &lt;i&gt;&lt;/i&gt; 316:  67-86&lt;br/&gt;</summary>
</entry>
<entry>
<id>http://publicationslist.org/fj.azuaje/refid9</id>
<updated>2008-04-30T21:12:47Z</updated>
<link rel='alternate' type='text/html' href='http://publicationslist.org/fj.azuaje#refid9'/>
<title type='html'>An assessment of recently published gene expression data analyses: reporting experimental design and statistical factors.</title>
<summary type='html'>BACKGROUND: The analysis of large-scale gene expression data is a fundamental approach to functional genomics and the identification of potential drug targets. Results derived from such studies cannot be trusted unless they are adequately designed and reported. The purpose of this study is to assess current practices on the reporting of experimental design and statistical analyses in gene expressi...&lt;br/&gt;&lt;br/&gt;Peyman Jafari, Francisco Azuaje (2006)  &lt;i&gt;BMC Med Inform Decis Mak&lt;/i&gt; &lt;i&gt;&lt;/i&gt; &lt;i&gt;&lt;/i&gt; 6:  &lt;br/&gt;</summary>
</entry>
<entry>
<id>http://publicationslist.org/fj.azuaje/refid12</id>
<updated>2008-04-30T21:12:47Z</updated>
<link rel='alternate' type='text/html' href='http://publicationslist.org/fj.azuaje#refid12'/>
<title type='html'>Estimating the number of clusters in DNA microarray data.</title>
<summary type='html'>OBJECTIVES: The main objective of the research is an application of the clustering and cluster validity methods to estimate the number of clusters in cancer tumor datasets. A weighed voting technique is going to be used to improve the prediction of the number of clusters based on different data mining techniques. These tools may be used for the identification of new tumour classes using DNA microa...&lt;br/&gt;&lt;br/&gt;Nadia Bolshakova, F Azuaje (2006)  &lt;i&gt;Methods Inf Med&lt;/i&gt; &lt;i&gt;&lt;/i&gt; &lt;i&gt;&lt;/i&gt; 45: 2 153-157&lt;br/&gt;</summary>
</entry>
<entry>
<id>http://publicationslist.org/fj.azuaje/refid13</id>
<updated>2008-04-30T21:12:47Z</updated>
<link rel='alternate' type='text/html' href='http://publicationslist.org/fj.azuaje#refid13'/>
<title type='html'>Machine learning approaches to supporting the identification of photoreceptor-enriched genes based on expression data.</title>
<summary type='html'>BACKGROUND: Retinal photoreceptors are highly specialised cells, which detect light and are central to mammalian vision. Many retinal diseases occur as a result of inherited dysfunction of the rod and cone photoreceptor cells. Development and maintenance of photoreceptors requires appropriate regulation of the many genes specifically or highly expressed in these cells. Over the last decades, diffe...&lt;br/&gt;&lt;br/&gt;Haiying Wang, Huiru Zheng, David Simpson, Francisco Azuaje (2006)  &lt;i&gt;BMC Bioinformatics&lt;/i&gt; &lt;i&gt;&lt;/i&gt; &lt;i&gt;&lt;/i&gt; 7:  &lt;br/&gt;</summary>
</entry>
<entry>
<id>http://publicationslist.org/fj.azuaje/refid34</id>
<updated>2008-05-02T13:49:16Z</updated>
<link rel='alternate' type='text/html' href='http://publicationslist.org/fj.azuaje#refid34'/>
<title type='html'>An assessment of machine and statistical learning approaches to inferring networks of protein-protein interactions </title>
<summary type='html'>Browne F, Wang H, Zheng H, Azuaje F (2006)  &lt;i&gt;Journal of Integrative Bioinformatics&lt;/i&gt; 3: 2 &lt;br/&gt;</summary>
</entry>
<entry>
<id>http://publicationslist.org/fj.azuaje/refid72</id>
<updated>2008-11-15T16:00:23Z</updated>
<link rel='alternate' type='text/html' href='http://publicationslist.org/fj.azuaje#refid72'/>
<title type='html'>Advanced methods and tools for ECG data analysis</title>
<summary type='html'> (2006)  :&lt;br/&gt;</summary>
</entry>
<entry>
<id>http://publicationslist.org/fj.azuaje/refid54</id>
<updated>2008-05-06T11:01:07Z</updated>
<link rel='alternate' type='text/html' href='http://publicationslist.org/fj.azuaje#refid54'/>
<title type='html'>Evaluation of Computational Classification Methods for Discriminating Human Heart Failure Etiology Based on Gene Expression Data</title>
<summary type='html'>Wang H, Zheng H, Azuaje F (2006)  &lt;i&gt;Proceedings of Computers in Cardiology 2006&lt;/i&gt; 277−280&lt;br/&gt;</summary>
</entry>
<entry>
<id>http://publicationslist.org/fj.azuaje/refid95</id>
<updated>2008-05-09T13:12:19Z</updated>
<link rel='alternate' type='text/html' href='http://publicationslist.org/fj.azuaje#refid95'/>
<title type='html'>Political Risk Assessment Using Integrative Data Mining </title>
<summary type='html'>Rios-Morales R, and Azuaje F (2006)  &lt;i&gt;presented at 4th INFINITI Conference on International Finance, Dublin, Ireland, 12-13 June, pp. 48,  2006.&lt;/i&gt;&lt;br/&gt;</summary>
</entry>
<entry>
<id>http://publicationslist.org/fj.azuaje/refid105</id>
<updated>2008-05-09T13:21:45Z</updated>
<link rel='alternate' type='text/html' href='http://publicationslist.org/fj.azuaje#refid105'/>
<title type='html'>Review of ‘Data Mining: Practical Machine Learning Tools and Techniques’ by Witten and Frank</title>
<summary type='html'>Azuaje F (2006)  &lt;i&gt;BioMedical Engineering OnLine, 5:51&lt;/i&gt;&lt;br/&gt;</summary>
</entry>
<entry>
<id>http://publicationslist.org/fj.azuaje/refid94</id>
<updated>2008-05-09T13:11:38Z</updated>
<link rel='alternate' type='text/html' href='http://publicationslist.org/fj.azuaje#refid94'/>
<title type='html'>An assessment of machine and statistical learning methods to inferring networks of protein-protein interactions  poster presented at the International Workshop on Systems Biology 2006, Hamilton Institute, National University of Ireland, Maynooth, July 17-19, 2006</title>
<summary type='html'>Browne F, Wang H, Zheng H, Azuaje F (2006)  &lt;i&gt;poster presented at the International Workshop on Systems Biology 2006, Hamilton Institute, National University of Ireland, Maynooth, July 17-19, 2006&lt;/i&gt;&lt;br/&gt;</summary>
</entry>
<entry>
<id>http://publicationslist.org/fj.azuaje/refid37</id>
<updated>2008-05-02T13:58:59Z</updated>
<link rel='alternate' type='text/html' href='http://publicationslist.org/fj.azuaje#refid37'/>
<title type='html'>Data and predictive model integration: An overview of key concepts, problems and solutions</title>
<summary type='html'>Azuaje F, Dopazo J, Wang H. (2005)  &lt;i&gt;Data Analysis and Visualization in Genomics and Proteomics&lt;/i&gt; 29-40&lt;br/&gt;</summary>
</entry>
<entry>
<id>http://publicationslist.org/fj.azuaje/refid18</id>
<updated>2008-04-30T21:12:47Z</updated>
<link rel='alternate' type='text/html' href='http://publicationslist.org/fj.azuaje#refid18'/>
<title type='html'>An integrated tool for microarray data clustering and cluster validity assessment.</title>
<summary type='html'>SUMMARY: In this paper we present a data mining system, which allows the application of different clustering and cluster validity algorithms for DNA microarray data. This tool may improve the quality of the data analysis results, and may support the prediction of the number of relevant clusters in the microarray datasets. This systematic evaluation approach may significantly aid genome expression ...&lt;br/&gt;&lt;br/&gt;Nadia Bolshakova, Francisco Azuaje, Pádraig Cunningham (2005)  &lt;i&gt;Bioinformatics&lt;/i&gt; &lt;i&gt;&lt;/i&gt; &lt;i&gt;&lt;/i&gt; 21: 4 451-455&lt;br/&gt;</summary>
</entry>
<entry>
<id>http://publicationslist.org/fj.azuaje/refid36</id>
<updated>2008-05-02T13:58:01Z</updated>
<link rel='alternate' type='text/html' href='http://publicationslist.org/fj.azuaje#refid36'/>
<title type='html'>Integrative data analysis and visualisation: Introduction to critical problems, goals and challenges</title>
<summary type='html'>Azuaje F, Dopazo J (2005)  &lt;i&gt;Data Analysis and Visualization in Genomics and Proteomics&lt;/i&gt; 3-9&lt;br/&gt;</summary>
</entry>
<entry>
<id>http://publicationslist.org/fj.azuaje/refid60</id>
<updated>2008-05-06T13:54:46Z</updated>
<link rel='alternate' type='text/html' href='http://publicationslist.org/fj.azuaje#refid60'/>
<title type='html'>A Missing Data Estimation Analysis in Type II Diabetes Databases </title>
<summary type='html'>Giardina M, Huo Y, Azuaje F, McCullagh P, Harper R (2005)  &lt;i&gt;Proc. of the 18th IEEE Symposium on Computer-Based Medical Systems&lt;/i&gt; 347-352&lt;br/&gt;</summary>
</entry>
<entry>
<id>http://publicationslist.org/fj.azuaje/refid73</id>
<updated>2008-11-15T16:00:39Z</updated>
<link rel='alternate' type='text/html' href='http://publicationslist.org/fj.azuaje#refid73'/>
<title type='html'>Data Analysis and Visualization in Genomics and Proteomics</title>
<summary type='html'> (2005)  :&lt;br/&gt;</summary>
</entry>
<entry>
<id>http://publicationslist.org/fj.azuaje/refid59</id>
<updated>2008-05-06T13:53:58Z</updated>
<link rel='alternate' type='text/html' href='http://publicationslist.org/fj.azuaje#refid59'/>
<title type='html'>An Ontology-Driven Clustering Method for Supporting Gene Expression Analysis</title>
<summary type='html'>Wang H, Azuaje F, Bodenreider O (2005)  &lt;i&gt;Proc. of the 18th IEEE Symposium on Computer-Based Medical Systems&lt;/i&gt; 389–394&lt;br/&gt;</summary>
</entry>
<entry>
<id>http://publicationslist.org/fj.azuaje/refid106</id>
<updated>2008-05-09T13:22:18Z</updated>
<link rel='alternate' type='text/html' href='http://publicationslist.org/fj.azuaje#refid106'/>
<title type='html'>Review of ‘Gene Regulation and Metabolism’ edited by Julio Collado-Vides and Ralf Hofestadt</title>
<summary type='html'>Azuaje F (2005)  &lt;i&gt;BioMedical Engineering OnLine, 4:47&lt;/i&gt;&lt;br/&gt;</summary>
</entry>
<entry>
<id>http://publicationslist.org/fj.azuaje/refid107</id>
<updated>2008-05-09T13:22:47Z</updated>
<link rel='alternate' type='text/html' href='http://publicationslist.org/fj.azuaje#refid107'/>
<title type='html'>Review of ‘Mining Imperfect Data’ by Ronald K. Pearson</title>
<summary type='html'>Azuaje F (2005)  &lt;i&gt;BioMedical Engineering OnLine, 4:43&lt;/i&gt;&lt;br/&gt;</summary>
</entry>
<entry>
<id>http://publicationslist.org/fj.azuaje/refid108</id>
<updated>2008-05-09T13:23:24Z</updated>
<link rel='alternate' type='text/html' href='http://publicationslist.org/fj.azuaje#refid108'/>
<title type='html'>Review of ‘Statistical Analysis and Data Display’ by Richard M. Heiberger and Burt Holland </title>
<summary type='html'>Azuaje F (2005)  &lt;i&gt;BioMedical Engineering OnLine, 4:18&lt;/i&gt;&lt;br/&gt;</summary>
</entry>
<entry>
<id>http://publicationslist.org/fj.azuaje/refid14</id>
<updated>2008-04-30T21:12:47Z</updated>
<link rel='alternate' type='text/html' href='http://publicationslist.org/fj.azuaje#refid14'/>
<title type='html'>Multiple SVM-RFE for gene selection in cancer classification with expression data.</title>
<summary type='html'>This paper proposes a new feature selection method that uses a backward elimination procedure similar to that implemented in support vector machine recursive feature elimination (SVM-RFE). Unlike the SVM-RFE method, at each step, the proposed approach computes the feature ranking score from a statistical analysis of weight vectors of multiple linear SVMs trained on subsamples of the original train...&lt;br/&gt;&lt;br/&gt;Kai-Bo Duan, Jagath C Rajapakse, Haiying Wang, Francisco Azuaje (2005)  &lt;i&gt;IEEE Trans Nanobioscience&lt;/i&gt; &lt;i&gt;&lt;/i&gt; &lt;i&gt;&lt;/i&gt; 4: 3 228-234&lt;br/&gt;</summary>
</entry>
<entry>
<id>http://publicationslist.org/fj.azuaje/refid96</id>
<updated>2008-05-09T13:14:04Z</updated>
<link rel='alternate' type='text/html' href='http://publicationslist.org/fj.azuaje#refid96'/>
<title type='html'>Ontology-driven similarity approaches to supporting gene functional assessment   </title>
<summary type='html'>Azuaje, F., Wang, H., and Bodenreider, O. (2005)  &lt;i&gt;In Proc. Of The Eighth Annual Bio-Ontologies Meeting, Michigan, 25 June, pp. 9-10, http://bio-ontologies.man.ac.uk/&lt;/i&gt;&lt;br/&gt;</summary>
</entry>
<entry>
<id>http://publicationslist.org/fj.azuaje/refid17</id>
<updated>2008-04-30T21:12:47Z</updated>
<link rel='alternate' type='text/html' href='http://publicationslist.org/fj.azuaje#refid17'/>
<title type='html'>Integrative data analysis for functional prediction: a multi-objective optimization approach.</title>
<summary type='html'>SUMMARY: An integrative classification system for functional genomics is introduced. A comparison with a previous study of the yeast mitochondrial proteome is presented. AVAILABILITY: A demonstration prototype, interSearch, is available on request. SUPPLEMENTARY INFORMATION: http://ijsr32.infj.ulster.ac.uk/~e10110731/interSearch.&lt;br/&gt;&lt;br/&gt;F Azuaje (2005)  &lt;i&gt;Bioinformatics&lt;/i&gt; &lt;i&gt;&lt;/i&gt; &lt;i&gt;&lt;/i&gt; 21: 9 2099-2100&lt;br/&gt;</summary>
</entry>
<entry>
<id>http://publicationslist.org/fj.azuaje/refid15</id>
<updated>2008-04-30T21:12:47Z</updated>
<link rel='alternate' type='text/html' href='http://publicationslist.org/fj.azuaje#refid15'/>
<title type='html'>A knowledge-driven approach to cluster validity assessment.</title>
<summary type='html'>This paper presents an approach to assessing cluster validity based on similarity knowledge extracted from the Gene Ontology. AVAILABILITY: The program is freely available for non-profit use on request from the authors.&lt;br/&gt;&lt;br/&gt;Nadia Bolshakova, Francisco Azuaje, Pádraig Cunningham (2005)  &lt;i&gt;Bioinformatics&lt;/i&gt; &lt;i&gt;&lt;/i&gt; &lt;i&gt;&lt;/i&gt; 21: 10 2546-2547&lt;br/&gt;</summary>
</entry>
<entry>
<id>http://publicationslist.org/fj.azuaje/refid16</id>
<updated>2008-04-30T21:12:47Z</updated>
<link rel='alternate' type='text/html' href='http://publicationslist.org/fj.azuaje#refid16'/>
<title type='html'>Non-linear mapping for exploratory data analysis in functional genomics.</title>
<summary type='html'>BACKGROUND: Several supervised and unsupervised learning tools are available to classify functional genomics data. However, relatively less attention has been given to exploratory, visualisation-driven approaches. Such approaches should satisfy the following factors: Support for intuitive cluster visualisation, user-friendly and robust application, computational efficiency and generation of biolog...&lt;br/&gt;&lt;br/&gt;Francisco Azuaje, Haiying Wang, Alban Chesneau (2005)  &lt;i&gt;BMC Bioinformatics&lt;/i&gt; &lt;i&gt;&lt;/i&gt; &lt;i&gt;&lt;/i&gt; 6:  &lt;br/&gt;</summary>
</entry>
<entry>
<id>http://publicationslist.org/fj.azuaje/refid113</id>
<updated>2008-05-09T13:29:21Z</updated>
<link rel='alternate' type='text/html' href='http://publicationslist.org/fj.azuaje#refid113'/>
<title type='html'>Guest Editorial Special Section on Molecular and Cellular Systems Biology </title>
<summary type='html'>Lopez J, Azuaje F, Prank K, Dubitzky (2004,)  &lt;i&gt;IEEE Transactions on Nanobioscience, Vol. 3 (3),  pp. 141-143.&lt;/i&gt;&lt;br/&gt;</summary>
</entry>
<entry>
<id>http://publicationslist.org/fj.azuaje/refid61</id>
<updated>2008-05-06T13:55:50Z</updated>
<link rel='alternate' type='text/html' href='http://publicationslist.org/fj.azuaje#refid61'/>
<title type='html'>Gene expression correlation and gene ontology-based similarity: An assessment of quantitative relationships</title>
<summary type='html'>Wang H, Azuaje F, Bodenreider O, Dopazo J. (2004)  &lt;i&gt;Proc. of the 2004 IEEE Symposium on Computational Intelligence in Bioinformatics and Computational Biology&lt;/i&gt; 25–31&lt;br/&gt;</summary>
</entry>
<entry>
<id>http://publicationslist.org/fj.azuaje/refid62</id>
<updated>2008-05-07T14:28:09Z</updated>
<link rel='alternate' type='text/html' href='http://publicationslist.org/fj.azuaje#refid62'/>
<title type='html'>Interactive neural network-based approaches for improving biomedical pattern discovery and visualisation</title>
<summary type='html'>Wang H, Azuaje F, Black N (2004)  &lt;i&gt;Proc. of International Symposium on Computational and Information Sciences (CIS'04)&lt;/i&gt; 556-561&lt;br/&gt;</summary>
</entry>
<entry>
<id>http://publicationslist.org/fj.azuaje/refid109</id>
<updated>2008-05-09T13:24:10Z</updated>
<link rel='alternate' type='text/html' href='http://publicationslist.org/fj.azuaje#refid109'/>
<title type='html'>Reply to comments on 'A computational evolutionary approach to evolving game strategy and cooperation'</title>
<summary type='html'>Azuaje F (2004)  &lt;i&gt;IEEE Trans. on Systems, Man and Cybernetics, Part B, Vol. 34, No 3, pp. 1573&lt;/i&gt;&lt;br/&gt;</summary>
</entry>
<entry>
<id>http://publicationslist.org/fj.azuaje/refid65</id>
<updated>2008-05-07T14:31:11Z</updated>
<link rel='alternate' type='text/html' href='http://publicationslist.org/fj.azuaje#refid65'/>
<title type='html'>A non-random data sampling method for classification model assessment </title>
<summary type='html'>Sprevak D, Azuaje F, Wang H (2004)  &lt;i&gt;Proc. of 17th International Conference on Pattern Recognition (ICPR 2004)&lt;/i&gt; &lt;br/&gt;</summary>
</entry>
<entry>
<id>http://publicationslist.org/fj.azuaje/refid97</id>
<updated>2008-05-09T13:14:42Z</updated>
<link rel='alternate' type='text/html' href='http://publicationslist.org/fj.azuaje#refid97'/>
<title type='html'>Gene ontology-driven similarity for gene expression correlation analaysis </title>
<summary type='html'>Azuaje F, Wang H, Bodenreider O, Dopazo J (2004)  &lt;i&gt;in Proc. of  the  2nd Conference on Standards and Ontologies for Functional Genomics (SOFG 2), Philadelphia, Pennsylvania, October 23-26, 2004, p. 47.&lt;/i&gt;&lt;br/&gt;</summary>
</entry>
<entry>
<id>http://publicationslist.org/fj.azuaje/refid68</id>
<updated>2008-05-08T09:53:34Z</updated>
<link rel='alternate' type='text/html' href='http://publicationslist.org/fj.azuaje#refid68'/>
<title type='html'>Data Mining Approaches to Diffuse Large B–Cell Lymphoma Gene Expression Data Interpretation  </title>
<summary type='html'>Aguilar-Ruiz J, Azuaje F,  Riquelme J (2004)  &lt;i&gt;Proceedings of 6th International Conference on Data Warehousing and Knowledge Discovery (DaWaK)&lt;/i&gt; &lt;br/&gt;</summary>
</entry>
<entry>
<id>http://publicationslist.org/fj.azuaje/refid63</id>
<updated>2008-05-07T14:29:24Z</updated>
<link rel='alternate' type='text/html' href='http://publicationslist.org/fj.azuaje#refid63'/>
<title type='html'>Methods and tools for generating and managing ecgML-based information</title>
<summary type='html'>Wang H, Azuaje F, Clifford G, Jung B, Black  (2004)  &lt;i&gt;Proc. of 2004 Computers in Cardiology&lt;/i&gt; 573-576&lt;br/&gt;</summary>
</entry>
<entry>
<id>http://publicationslist.org/fj.azuaje/refid74</id>
<updated>2008-05-08T10:00:35Z</updated>
<link rel='alternate' type='text/html' href='http://publicationslist.org/fj.azuaje#refid74'/>
<title type='html'> Artificial Intelligence Methods and Tools for Systems Biology</title>
<summary type='html'> (2004)  :&lt;br/&gt;</summary>
</entry>
<entry>
<id>http://publicationslist.org/fj.azuaje/refid67</id>
<updated>2008-05-08T09:52:33Z</updated>
<link rel='alternate' type='text/html' href='http://publicationslist.org/fj.azuaje#refid67'/>
<title type='html'>An integrated tool for microarray data clustering and cluster validity</title>
<summary type='html'>Bolshakova N, Azuaje F, Cunningham P (2004)  &lt;i&gt;Proc. of 19th ACM Symposium on Applied Computing (SAC)&lt;/i&gt;  133 – 137&lt;br/&gt;</summary>
</entry>
<entry>
<id>http://publicationslist.org/fj.azuaje/refid64</id>
<updated>2008-05-07T14:30:17Z</updated>
<link rel='alternate' type='text/html' href='http://publicationslist.org/fj.azuaje#refid64'/>
<title type='html'>Knowledge discovery in lymphoma cancer from gene-expression</title>
<summary type='html'>Aguilar-Ruiz J, Azuaje F (2004)  &lt;i&gt; Proc. of Fifth International Conference on Intelligent Data Engineering and Automated Learning (IDEAL 2004)&lt;/i&gt; 31-38&lt;br/&gt;</summary>
</entry>
<entry>
<id>http://publicationslist.org/fj.azuaje/refid19</id>
<updated>2008-04-30T21:12:47Z</updated>
<link rel='alternate' type='text/html' href='http://publicationslist.org/fj.azuaje#refid19'/>
<title type='html'>An integrative and interactive framework for improving biomedical pattern discovery and visualization.</title>
<summary type='html'>Recent progress in medical sciences has led to an explosive growth of data. Due to its inherent complexity and diversity, mining such volumes of data to extract relevant knowledge represents an enormous challenge and opportunity. Interactive pattern discovery and visualization systems for biomedical data mining have received relatively little attention. Emphasis has been traditionally placed on au...&lt;br/&gt;&lt;br/&gt;Haiying Wang, Francisco Azuaje, Norman Black (2004)  &lt;i&gt;IEEE Trans Inf Technol Biomed&lt;/i&gt; &lt;i&gt;&lt;/i&gt; &lt;i&gt;&lt;/i&gt; 8: 1 16-27&lt;br/&gt;</summary>
</entry>
<entry>
<id>http://publicationslist.org/fj.azuaje/refid66</id>
<updated>2008-05-07T14:32:08Z</updated>
<link rel='alternate' type='text/html' href='http://publicationslist.org/fj.azuaje#refid66'/>
<title type='html'>Incorporating ontology-driven similarity knowledge into functional genomics: An exploratory study </title>
<summary type='html'>Azuaje F, Bodenreider O (2004)  &lt;i&gt;Proceedings of IEEE 4th Symposium on Bioinformatics and Bioengineering (BIBE-2004)&lt;/i&gt; 317-324&lt;br/&gt;</summary>
</entry>
<entry>
<id>http://publicationslist.org/fj.azuaje/refid98</id>
<updated>2008-05-09T13:15:40Z</updated>
<link rel='alternate' type='text/html' href='http://publicationslist.org/fj.azuaje#refid98'/>
<title type='html'>Estimating the number of clusters in DNA microarray data </title>
<summary type='html'>Bolshakova N, Azuaje F (2004)  &lt;i&gt;Proceedings of  the International Joint Meeting EuroMISE 2004 - International Medical Informatics Association (IMIA) Conference on Statistical Methodologies in Bioinformatics and Clinical Trials, Prague, April 12th-15th, p. 25. 2004.&lt;/i&gt;&lt;br/&gt;</summary>
</entry>
<entry>
<id>http://publicationslist.org/fj.azuaje/refid39</id>
<updated>2008-05-02T14:01:37Z</updated>
<link rel='alternate' type='text/html' href='http://publicationslist.org/fj.azuaje#refid39'/>
<title type='html'>Cluster validation techniques for genome expression data classification</title>
<summary type='html'>Bolshakova N, Azuaje F (2003)  &lt;i&gt;Signal Processing&lt;/i&gt; 83: 4 825-833&lt;br/&gt;</summary>
</entry>
<entry>
<id>http://publicationslist.org/fj.azuaje/refid41</id>
<updated>2008-05-05T07:39:43Z</updated>
<link rel='alternate' type='text/html' href='http://publicationslist.org/fj.azuaje#refid41'/>
<title type='html'>Clustering genome expression data: Design and evaluation principles</title>
<summary type='html'>Azuaje F, and Bolshakova N (2003)  &lt;i&gt;Understanding and Using Microarray Analysis Techniques: A Practical Guide&lt;/i&gt; 230-245&lt;br/&gt;</summary>
</entry>
<entry>
<id>http://publicationslist.org/fj.azuaje/refid114</id>
<updated>2008-05-09T13:30:14Z</updated>
<link rel='alternate' type='text/html' href='http://publicationslist.org/fj.azuaje#refid114'/>
<title type='html'>AI in the Life Sciences </title>
<summary type='html'>Dubitzky W, Azuaje F (2003)  &lt;i&gt;Artificial Intelligence Review, 20, pp. 7-11&lt;/i&gt;&lt;br/&gt;</summary>
</entry>
<entry>
<id>http://publicationslist.org/fj.azuaje/refid111</id>
<updated>2008-05-09T13:26:33Z</updated>
<link rel='alternate' type='text/html' href='http://publicationslist.org/fj.azuaje#refid111'/>
<title type='html'>Review of ‘Self-organizing neural networks’ by Seiffert U. and Jain L</title>
<summary type='html'>Azuaje F (2003)  &lt;i&gt;Neural Networks, Vol. 16 (1), pp. 145-146&lt;/i&gt;&lt;br/&gt;</summary>
</entry>
<entry>
<id>http://publicationslist.org/fj.azuaje/refid42</id>
<updated>2008-05-05T07:40:44Z</updated>
<link rel='alternate' type='text/html' href='http://publicationslist.org/fj.azuaje#refid42'/>
<title type='html'>Discovering genome expression patterns with self-organizing neural networks</title>
<summary type='html'>Azuaje F (2003)  &lt;i&gt;Understanding and Using Microarray Analysis Techniques: A Practical Guide&lt;/i&gt; 261-273&lt;br/&gt;</summary>
</entry>
<entry>
<id>http://publicationslist.org/fj.azuaje/refid22</id>
<updated>2008-04-30T21:12:47Z</updated>
<link rel='alternate' type='text/html' href='http://publicationslist.org/fj.azuaje#refid22'/>
<title type='html'>Clustering-based approaches to discovering and visualising microarray data patterns.</title>
<summary type='html'>This article focuses on clustering techniques for the analysis of microarray data and discusses contributions and applications for the implementation of intelligent diagnostic systems and therapy design studies. Approaches to validating and visualising expression clustering results and software and other relevant resources to support clustering-based analyses are reviewed. Finally, this paper addr...&lt;br/&gt;&lt;br/&gt;Francisco Azuaje (2003)  &lt;i&gt;Brief Bioinform&lt;/i&gt; &lt;i&gt;&lt;/i&gt; &lt;i&gt;&lt;/i&gt; 4: 1 31-42&lt;br/&gt;</summary>
</entry>
<entry>
<id>http://publicationslist.org/fj.azuaje/refid23</id>
<updated>2008-04-30T21:12:47Z</updated>
<link rel='alternate' type='text/html' href='http://publicationslist.org/fj.azuaje#refid23'/>
<title type='html'>Genomic data sampling and its effect on classification performance assessment.</title>
<summary type='html'>BACKGROUND: Supervised classification is fundamental in bioinformatics. Machine learning models, such as neural networks, have been applied to discover genes and expression patterns. This process is achieved by implementing training and test phases. In the training phase, a set of cases and their respective labels are used to build a classifier. During testing, the classifier is used to predict ne...&lt;br/&gt;&lt;br/&gt;Francisco Azuaje (2003)  &lt;i&gt;BMC Bioinformatics&lt;/i&gt; &lt;i&gt;&lt;/i&gt; &lt;i&gt;&lt;/i&gt; 4:  &lt;br/&gt;</summary>
</entry>
<entry>
<id>http://publicationslist.org/fj.azuaje/refid21</id>
<updated>2008-04-30T21:12:47Z</updated>
<link rel='alternate' type='text/html' href='http://publicationslist.org/fj.azuaje#refid21'/>
<title type='html'>A markup language for electrocardiogram data acquisition and analysis (ecgML).</title>
<summary type='html'>BACKGROUND: The storage and distribution of electrocardiogram data is based on different formats. There is a need to promote the development of standards for their exchange and analysis. Such models should be platform-/ system- and application-independent, flexible and open to every member of the scientific community. METHODS: A minimum set of information for the representation and storage of elec...&lt;br/&gt;&lt;br/&gt;Haiying Wang, Francisco Azuaje, Benjamin Jung, Norman Black (2003)  &lt;i&gt;BMC Med Inform Decis Mak&lt;/i&gt; &lt;i&gt;&lt;/i&gt; &lt;i&gt;&lt;/i&gt; 3:  &lt;br/&gt;</summary>
</entry>
<entry>
<id>http://publicationslist.org/fj.azuaje/refid20</id>
<updated>2008-04-30T21:12:47Z</updated>
<link rel='alternate' type='text/html' href='http://publicationslist.org/fj.azuaje#refid20'/>
<title type='html'>Machaon CVE: cluster validation for gene expression data.</title>
<summary type='html'>SUMMARY: This paper presents a cluster validation tool for gene expression data. Machaon CVE (Clustering and Validation Environment) system aims to partition samples or genes into groups characterized by similar expression patterns, and to evaluate the quality of the clusters obtained. AVAILABILITY: The program is freely available for non-profit use on request at http://www.cs.tcd.ie/Nadia.Bolshak...&lt;br/&gt;&lt;br/&gt;Nadia Bolshakova, Francisco Azuaje (2003)  &lt;i&gt;Bioinformatics&lt;/i&gt; &lt;i&gt;&lt;/i&gt; &lt;i&gt;&lt;/i&gt; 19: 18 2494-2495&lt;br/&gt;</summary>
</entry>
<entry>
<id>http://publicationslist.org/fj.azuaje/refid110</id>
<updated>2008-05-09T13:25:16Z</updated>
<link rel='alternate' type='text/html' href='http://publicationslist.org/fj.azuaje#refid110'/>
<title type='html'>Review of ‘Artificial immune systems: a new computational intelligence approach’ by de Castro L. and Timmis J.</title>
<summary type='html'>Azuaje F (2003)  &lt;i&gt;Neural Networks, Vol. 16 (8), pp. 1229-1230.&lt;/i&gt;&lt;br/&gt;</summary>
</entry>
<entry>
<id>http://publicationslist.org/fj.azuaje/refid71</id>
<updated>2008-05-08T09:56:44Z</updated>
<link rel='alternate' type='text/html' href='http://publicationslist.org/fj.azuaje#refid71'/>
<title type='html'>Biomolecular pattern discovery, visualisation and classification based on a self-adaptive neural networks </title>
<summary type='html'>Wang H, Azuaje F, Black N (2003)  &lt;i&gt;Proc. of  Prep 2003, Postgraduate Research Conference in Electronics, Photonics, Communications and Software&lt;/i&gt; 228-229&lt;br/&gt;</summary>
</entry>
<entry>
<id>http://publicationslist.org/fj.azuaje/refid3</id>
<updated>2008-04-30T21:12:47Z</updated>
<link rel='alternate' type='text/html' href='http://publicationslist.org/fj.azuaje#refid3'/>
<title type='html'>A computational evolutionary approach to evolving game strategy and cooperation.</title>
<summary type='html'>This paper describes an approach to the co-evolution of competing virtual creatures. Pairs of individuals enter one-on-one contests in which they contend to establish contact with a common resource. The individuals are subjected to competitive fitness functions. In each tournament one type of organism implements a game rule based on a set of basic cognitive capabilities. The second type of contest...&lt;br/&gt;&lt;br/&gt;F Azuaje (2003)  &lt;i&gt;IEEE Trans Syst Man Cybern B Cybern&lt;/i&gt; &lt;i&gt;&lt;/i&gt; &lt;i&gt;&lt;/i&gt; 33: 3 498-503&lt;br/&gt;</summary>
</entry>
<entry>
<id>http://publicationslist.org/fj.azuaje/refid69</id>
<updated>2008-05-08T09:54:35Z</updated>
<link rel='alternate' type='text/html' href='http://publicationslist.org/fj.azuaje#refid69'/>
<title type='html'>ecgML: Tools and technologies for multimedia ECG presentation </title>
<summary type='html'>Wang H, Jung B, Azuaje F, Black N (2003)  &lt;i&gt;Proc. of XML Europe Conference&lt;/i&gt; &lt;br/&gt;</summary>
</entry>
<entry>
<id>http://publicationslist.org/fj.azuaje/refid76</id>
<updated>2008-05-08T13:00:00Z</updated>
<link rel='alternate' type='text/html' href='http://publicationslist.org/fj.azuaje#refid76'/>
<title type='html'>Improving expression data mining through cluster validation
</title>
<summary type='html'>Bolshakova N, Azuaje F (2003)  &lt;i&gt;Proc. of IEEE International Conference on Information Technology Applications in Biomedicine&lt;/i&gt; 19-22&lt;br/&gt;</summary>
</entry>
<entry>
<id>http://publicationslist.org/fj.azuaje/refid70</id>
<updated>2008-05-08T09:55:22Z</updated>
<link rel='alternate' type='text/html' href='http://publicationslist.org/fj.azuaje#refid70'/>
<title type='html'>Biomedical pattern discovery and visualisation based on self-adaptive neural networks </title>
<summary type='html'>Wang H, Azuaje F, Black N (2003)  &lt;i&gt;Proc. of IEEE International Conference on Information Technology Applications in Biomedicine, ITAB-2003&lt;/i&gt; 306-309&lt;br/&gt;</summary>
</entry>
<entry>
<id>http://publicationslist.org/fj.azuaje/refid77</id>
<updated>2008-05-08T13:00:48Z</updated>
<link rel='alternate' type='text/html' href='http://publicationslist.org/fj.azuaje#refid77'/>
<title type='html'>An immune-inspired approach to learning and classification</title>
<summary type='html'>Azuaje F (2003)  &lt;i&gt;Proceedings of the 21st IASTED International Conference on Applied Informatics&lt;/i&gt; 1-6&lt;br/&gt;</summary>
</entry>
<entry>
<id>http://publicationslist.org/fj.azuaje/refid24</id>
<updated>2008-04-30T21:12:47Z</updated>
<link rel='alternate' type='text/html' href='http://publicationslist.org/fj.azuaje#refid24'/>
<title type='html'>In silico approaches to microarray-based disease classification and gene function discovery.</title>
<summary type='html'>The automated analysis of transcriptional profiling data promises a wealth of information that may be used to develop a more complete understanding of gene function and interactions. Moreover, it may improve the effectiveness of complex diagnostic tasks. This article discusses important data mining and management techniques to analyse genome-wide expression data. It reviews some of the major disco...&lt;br/&gt;&lt;br/&gt;Francisco Azuaje (2002)  &lt;i&gt;Ann Med&lt;/i&gt; &lt;i&gt;&lt;/i&gt; &lt;i&gt;&lt;/i&gt; 34: 4 299-305&lt;br/&gt;</summary>
</entry>
<entry>
<id>http://publicationslist.org/fj.azuaje/refid75</id>
<updated>2008-05-08T12:59:12Z</updated>
<link rel='alternate' type='text/html' href='http://publicationslist.org/fj.azuaje#refid75'/>
<title type='html'>Estudio del cáncer de linfoma a partir del nivel de expresividad genética 
con técnicas KDD
</title>
<summary type='html'>Aguilar-Ruiz J, Azuaje F,  Riquelme J, Mateos D, Hidalgo J, Rueda M, Ortiz M ( 2002)  &lt;i&gt;Proceedings of IBERAMIA 2002, VIII Iberoamerican Conference on Artificial Intelligence&lt;/i&gt; 137-148&lt;br/&gt;</summary>
</entry>
<entry>
<id>http://publicationslist.org/fj.azuaje/refid10</id>
<updated>2008-04-30T21:12:47Z</updated>
<link rel='alternate' type='text/html' href='http://publicationslist.org/fj.azuaje#refid10'/>
<title type='html'>Improving biomolecular pattern discovery and visualization with hybrid self-adaptive networks.</title>
<summary type='html'>There is an increasing need to develop powerful techniques to improve biomedical pattern discovery and visualization. This paper presents an automated approach, based on hybrid self-adaptive neural networks, to pattern identification and visualization for biomolecular data. The methods are tested on two datasets: leukemia expression data and DNA splice-junction sequences. Several supervised and un...&lt;br/&gt;&lt;br/&gt;Haiying Wang, Francisco Azuaje, Norman Black (2002)  &lt;i&gt;IEEE Trans Nanobioscience&lt;/i&gt; &lt;i&gt;&lt;/i&gt; &lt;i&gt;&lt;/i&gt; 1: 4 146-166&lt;br/&gt;</summary>
</entry>
<entry>
<id>http://publicationslist.org/fj.azuaje/refid112</id>
<updated>2008-05-09T13:27:33Z</updated>
<link rel='alternate' type='text/html' href='http://publicationslist.org/fj.azuaje#refid112'/>
<title type='html'>Review of ‘Classification’ by Gordon A.</title>
<summary type='html'>Azuaje F (2002)  &lt;i&gt; IEEE Engineering in Biology and Medicine Medicine, Vol. 21 (4), p. 132&lt;/i&gt;&lt;br/&gt;</summary>
</entry>
<entry>
<id>http://publicationslist.org/fj.azuaje/refid25</id>
<updated>2008-04-30T21:12:47Z</updated>
<link rel='alternate' type='text/html' href='http://publicationslist.org/fj.azuaje#refid25'/>
<title type='html'>A cluster validity framework for genome expression data.</title>
<summary type='html'>This paper presents a method for the assessment of expression cluster validity.&lt;br/&gt;&lt;br/&gt;F Azuaje (2002)  &lt;i&gt;Bioinformatics&lt;/i&gt; &lt;i&gt;&lt;/i&gt; &lt;i&gt;&lt;/i&gt; 18: 2 319-320&lt;br/&gt;</summary>
</entry>
<entry>
<id>http://publicationslist.org/fj.azuaje/refid26</id>
<updated>2008-04-30T21:12:47Z</updated>
<link rel='alternate' type='text/html' href='http://publicationslist.org/fj.azuaje#refid26'/>
<title type='html'>Genomes, man, and machines.</title>
<summary type='html'>F Azuaje (2001)  &lt;i&gt;IEEE Eng Med Biol Mag&lt;/i&gt; &lt;i&gt;&lt;/i&gt; &lt;i&gt;&lt;/i&gt; 20: 4 18-9; 21&lt;br/&gt;</summary>
</entry>
<entry>
<id>http://publicationslist.org/fj.azuaje/refid40</id>
<updated>2008-05-05T07:38:19Z</updated>
<link rel='alternate' type='text/html' href='http://publicationslist.org/fj.azuaje#refid40'/>
<title type='html'>An unsupervised neural network approach to discovering gene expression patterns in B-cell lymphoma</title>
<summary type='html'>Azuaje F (2001)  &lt;i&gt;Online Journal of Bioinformatics&lt;/i&gt; 1:  23-41&lt;br/&gt;</summary>
</entry>
<entry>
<id>http://publicationslist.org/fj.azuaje/refid44</id>
<updated>2008-05-05T07:44:28Z</updated>
<link rel='alternate' type='text/html' href='http://publicationslist.org/fj.azuaje#refid44'/>
<title type='html'>Tumor identification by gene expression profiles: A comparison of five different clustering methods</title>
<summary type='html'>Granzow M., Berrar D., Dubitzky W., Schuster A., Azuaje F. and Eils R (2001)  &lt;i&gt;ACM-SIGBIO Letters&lt;/i&gt; 21: 1 16-22&lt;br/&gt;</summary>
</entry>
<entry>
<id>http://publicationslist.org/fj.azuaje/refid27</id>
<updated>2008-04-30T21:12:47Z</updated>
<link rel='alternate' type='text/html' href='http://publicationslist.org/fj.azuaje#refid27'/>
<title type='html'>A computational neural approach to support the discovery of gene function and classes of cancer.</title>
<summary type='html'>Advances in molecular classification of tumours may play a central role in cancer treatment. Here, a novel approach to genome expression pattern interpretation is described and applied to the recognition of B-cell malignancies as a test set. Using cDNA microarrays data generated by a previous study, a neural network model known as simplified fuzzy ARTMAP is able to identify normal and diffuse larg...&lt;br/&gt;&lt;br/&gt;F Azuaje (2001)  &lt;i&gt;IEEE Trans Biomed Eng&lt;/i&gt; &lt;i&gt;&lt;/i&gt; &lt;i&gt;&lt;/i&gt; 48: 3 332-339&lt;br/&gt;</summary>
</entry>
<entry>
<id>http://publicationslist.org/fj.azuaje/refid79</id>
<updated>2008-05-08T13:02:46Z</updated>
<link rel='alternate' type='text/html' href='http://publicationslist.org/fj.azuaje#refid79'/>
<title type='html'>Evolving game strategy through diversity and cooperation
</title>
<summary type='html'>Azuaje F (2001)  &lt;i&gt;Proceedings of the 2001 IASTED International Conference on Artificial Intelligence and Applications&lt;/i&gt; 171-176&lt;br/&gt;</summary>
</entry>
<entry>
<id>http://publicationslist.org/fj.azuaje/refid115</id>
<updated>2008-05-09T13:31:07Z</updated>
<link rel='alternate' type='text/html' href='http://publicationslist.org/fj.azuaje#refid115'/>
<title type='html'>Genomes, Man and Machines </title>
<summary type='html'>Azuaje F (2001)  &lt;i&gt;IEEE Engineering in Biology and Medicine, Vol. 20, No 4, pp. 18-19 and 21&lt;/i&gt;&lt;br/&gt;</summary>
</entry>
<entry>
<id>http://publicationslist.org/fj.azuaje/refid78</id>
<updated>2008-05-08T13:01:49Z</updated>
<link rel='alternate' type='text/html' href='http://publicationslist.org/fj.azuaje#refid78'/>
<title type='html'>Adaptation and reverse evolution in a digital ecosystem

</title>
<summary type='html'>Azuaje F (2001)  &lt;i&gt;Proceedings of IEEE Conference on Systems, Man and Cybernetics&lt;/i&gt; 1064- 1068&lt;br/&gt;</summary>
</entry>
<entry>
<id>http://publicationslist.org/fj.azuaje/refid45</id>
<updated>2008-05-05T07:45:44Z</updated>
<link rel='alternate' type='text/html' href='http://publicationslist.org/fj.azuaje#refid45'/>
<title type='html'>A genetic algorithm and a growing cell structures approach to learning case retrieval structures</title>
<summary type='html'>Dubitzky, W and Azuaje F (2000)  &lt;i&gt;Soft Computing in Case-Based Reasoning&lt;/i&gt; 115-146&lt;br/&gt;</summary>
</entry>
<entry>
<id>http://publicationslist.org/fj.azuaje/refid43</id>
<updated>2008-05-05T07:42:28Z</updated>
<link rel='alternate' type='text/html' href='http://publicationslist.org/fj.azuaje#refid43'/>
<title type='html'>Case retrieval strategies for CBR: a categorised bibliography</title>
<summary type='html'>Azuaje F, Dubitzky W, Black N, Adamson K (2000)  &lt;i&gt;The Knowledge Engineering Review&lt;/i&gt; 15 : 4 371-379&lt;br/&gt;</summary>
</entry>
<entry>
<id>http://publicationslist.org/fj.azuaje/refid81</id>
<updated>2008-05-08T13:29:48Z</updated>
<link rel='alternate' type='text/html' href='http://publicationslist.org/fj.azuaje#refid81'/>
<title type='html'>Gene expression patterns and cancer classification: A self-adaptive and incremental neural approach </title>
<summary type='html'>Azuaje F (2000)  &lt;i&gt;Proceedings of IEEE International Conference on Information Technology Applications in Biomedicine&lt;/i&gt; 308-313&lt;br/&gt;</summary>
</entry>
<entry>
<id>http://publicationslist.org/fj.azuaje/refid80</id>
<updated>2008-05-08T13:28:46Z</updated>
<link rel='alternate' type='text/html' href='http://publicationslist.org/fj.azuaje#refid80'/>
<title type='html'>Making genome expression data meaningful: Prediction and discovery of classes of cancer through a connectionist learning approach
</title>
<summary type='html'>Azuaje F (2000)  &lt;i&gt;Proceedings of IEEE International Symposium on Bioinformatics and Biomedical Engineering&lt;/i&gt; 208- 213&lt;br/&gt;</summary>
</entry>
<entry>
<id>http://publicationslist.org/fj.azuaje/refid28</id>
<updated>2008-04-30T21:12:47Z</updated>
<link rel='alternate' type='text/html' href='http://publicationslist.org/fj.azuaje#refid28'/>
<title type='html'>Interpretation of genome expression patterns: computational challenges and opportunities.</title>
<summary type='html'>F Azuaje (2000)  &lt;i&gt;IEEE Eng Med Biol Mag&lt;/i&gt; &lt;i&gt;&lt;/i&gt; &lt;i&gt;&lt;/i&gt; 19: 6 &lt;br/&gt;</summary>
</entry>
<entry>
<id>http://publicationslist.org/fj.azuaje/refid99</id>
<updated>2008-05-09T13:16:21Z</updated>
<link rel='alternate' type='text/html' href='http://publicationslist.org/fj.azuaje#refid99'/>
<title type='html'>Tumor identification by gene expression profiles: A comparison of five clustering methods </title>
<summary type='html'>Schuster A., Dubitzky W., Azuaje F, Granzow M., Berrar D. and Eils R (2000)  &lt;i&gt;Proceedings of CAMDA-00: Critical Assessment of Techniques for Microarray Data Mining , pp. 34-35, 2000.&lt;/i&gt;&lt;br/&gt;</summary>
</entry>
<entry>
<id>http://publicationslist.org/fj.azuaje/refid2</id>
<updated>2008-04-30T21:12:47Z</updated>
<link rel='alternate' type='text/html' href='http://publicationslist.org/fj.azuaje#refid2'/>
<title type='html'>Discovering relevance knowledge in data: a growing cell structures approach.</title>
<summary type='html'>Both information retrieval and case-based reasoning systems rely on effective and efficient selection of relevant data. Typically, relevance in such systems is approximated by similarity or indexing models. However, the definition of what makes data items similar or how they should be indexed is often nontrivial and time-consuming. Based on growing cell structure artificial neural networks, this p...&lt;br/&gt;&lt;br/&gt;F Azuaje, W Dubitzky, N Black, K Adamson (2000)  &lt;i&gt;IEEE Trans Syst Man Cybern B Cybern&lt;/i&gt; &lt;i&gt;&lt;/i&gt; &lt;i&gt;&lt;/i&gt; 30: 3 448-460&lt;br/&gt;</summary>
</entry>
<entry>
<id>http://publicationslist.org/fj.azuaje/refid90</id>
<updated>2008-05-09T13:06:30Z</updated>
<link rel='alternate' type='text/html' href='http://publicationslist.org/fj.azuaje#refid90'/>
<title type='html'>On local and global feature weight discovery for case-based reasoning
</title>
<summary type='html'>Dubitzky W, Azuaje F, Lopes P, Black, McCullagh P, and Song P ( 1999)  &lt;i&gt;Proc. ISCA 14th Int. Conf. on Computers and their Applications&lt;/i&gt; 107-110&lt;br/&gt;</summary>
</entry>
<entry>
<id>http://publicationslist.org/fj.azuaje/refid29</id>
<updated>2008-05-05T11:34:26Z</updated>
<link rel='alternate' type='text/html' href='http://publicationslist.org/fj.azuaje#refid29'/>
<title type='html'>Improving clinical decision support through case-based data fusion.</title>
<summary type='html'>This paper presents an information fusion technique based on a knowledge discovery model, and the case-based reasoning decision framework. Using signal data and database records from the heart disease risk estimation domain, three data fusion methods are discussed. Two of these methods combine information at the retrieval-outcome level, and one method merges data at the discovery-input level. The ...&lt;br/&gt;&lt;br/&gt;F Azuaje, W Dubitzky, N Black, K Adamson (1999)  &lt;i&gt;IEEE Trans Biomed Eng&lt;/i&gt; 46: 10 1181-1185&lt;br/&gt;</summary>
</entry>
<entry>
<id>http://publicationslist.org/fj.azuaje/refid30</id>
<updated>2008-04-30T21:12:47Z</updated>
<link rel='alternate' type='text/html' href='http://publicationslist.org/fj.azuaje#refid30'/>
<title type='html'>Predicting coronary disease risk based on short-term RR interval measurements: a neural network approach.</title>
<summary type='html'>Coronary heart disease is a multifactorial disease and it remains the most common cause of death in many countries. Heart rate variability has been used for non-invasive measurement of parasympathetic activity and prediction of cardiac death. Patterns of heart rate variability associated with respiratory sinus arrhythmia have recently been considered as possible indicators of coronary heart diseas...&lt;br/&gt;&lt;br/&gt;F Azuaje, W Dubitzky, P Lopes, N Black, K Adamson, X Wu, J A White (1999)  &lt;i&gt;Artif Intell Med&lt;/i&gt; &lt;i&gt;&lt;/i&gt; &lt;i&gt;&lt;/i&gt; 15: 3 275-297&lt;br/&gt;</summary>
</entry>
<entry>
<id>http://publicationslist.org/fj.azuaje/refid83</id>
<updated>2008-05-08T13:31:34Z</updated>
<link rel='alternate' type='text/html' href='http://publicationslist.org/fj.azuaje#refid83'/>
<title type='html'>A neural network approach for case retrieval
</title>
<summary type='html'>Wu X, Dubitzky W, and Azuaje F (1999)  &lt;i&gt;Proceedings of the 2nd International Conference on Information Fusion&lt;/i&gt; 46-52&lt;br/&gt;</summary>
</entry>
<entry>
<id>http://publicationslist.org/fj.azuaje/refid89</id>
<updated>2008-05-09T13:05:32Z</updated>
<link rel='alternate' type='text/html' href='http://publicationslist.org/fj.azuaje#refid89'/>
<title type='html'>Viewing knowledge management as a case-based application </title>
<summary type='html'>Dubitzky W, Büchner A, and Azuaje, F (1999)  &lt;i&gt;Proceedings of the AAAI’99 Workshop on Knowledge Management and CBR Synergy&lt;/i&gt; 23-27&lt;br/&gt;</summary>
</entry>
<entry>
<id>http://publicationslist.org/fj.azuaje/refid82</id>
<updated>2008-05-08T13:30:26Z</updated>
<link rel='alternate' type='text/html' href='http://publicationslist.org/fj.azuaje#refid82'/>
<title type='html'>Discovering and fusing relevant knowledge in databases </title>
<summary type='html'>Azuaje F, Dubitzky W, Black N, Adamson K (1999)  &lt;i&gt;Proceedings of the 2nd International Conference on Information Fusion&lt;/i&gt; 31-38&lt;br/&gt;</summary>
</entry>
<entry>
<id>http://publicationslist.org/fj.azuaje/refid84</id>
<updated>2008-05-08T13:32:31Z</updated>
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<title type='html'>Automated modelling of case retrieval structures using self-organising neural networks </title>
<summary type='html'>Azuaje F, Dubitzky W, Black N, and Adamson K (1999)  &lt;i&gt;Proceedings of the ISCA International Conference on Information Reuse and Integration&lt;/i&gt; 32-35&lt;br/&gt;</summary>
</entry>
<entry>
<id>http://publicationslist.org/fj.azuaje/refid101</id>
<updated>2008-05-09T13:17:52Z</updated>
<link rel='alternate' type='text/html' href='http://publicationslist.org/fj.azuaje#refid101'/>
<title type='html'>Making clinical data meaningful: Knowledge discovery in coronary disease risk assessment </title>
<summary type='html'>Azuaje F, Dubitzky W, Lopes P, Black N, Adamson K, Wu X, and White J. (1998)  &lt;i&gt;Proceedings of Bio-Engineering in Ireland, Limerick, Ireland, pp. 62, Jan 30, 1998.&lt;/i&gt;&lt;br/&gt;</summary>
</entry>
<entry>
<id>http://publicationslist.org/fj.azuaje/refid87</id>
<updated>2008-05-09T13:02:52Z</updated>
<link rel='alternate' type='text/html' href='http://publicationslist.org/fj.azuaje#refid87'/>
<title type='html'>Knowledge discovery in electrocardiographic data based on neural clustering algorithms </title>
<summary type='html'>Azuaje F, Dubitzky W, Lopes P, Black N, Adamson K, Wu X, and White J. (1998)  &lt;i&gt;Proceedings of the VIII Mediterranean Conference on Medical and Biological Engineering and Computing (MEDICON '98)&lt;/i&gt; &lt;br/&gt;</summary>
</entry>
<entry>
<id>http://publicationslist.org/fj.azuaje/refid100</id>
<updated>2008-05-09T13:17:14Z</updated>
<link rel='alternate' type='text/html' href='http://publicationslist.org/fj.azuaje#refid100'/>
<title type='html'>Making clinical data meaningful: Knowledge discovery in coronary disease risk assessment </title>
<summary type='html'>Azuaje F, Dubitzky W, Lopes P, Black N, Adamson K, Wu X, and White J.  (1998)  &lt;i&gt;Irish Journal of Medical Science, 167(4), 274, 1998.&lt;/i&gt;&lt;br/&gt;</summary>
</entry>
<entry>
<id>http://publicationslist.org/fj.azuaje/refid85</id>
<updated>2008-05-08T13:34:44Z</updated>
<link rel='alternate' type='text/html' href='http://publicationslist.org/fj.azuaje#refid85'/>
<title type='html'>Discovery of incomplete knowledge in electrocardiographic data</title>
<summary type='html'>Azuaje F, Dubitzky W, Lopes P, Black N, Adamson K, Wu X, and White J.  (1998)  &lt;i&gt;Proceedings of the Third International Conference on Neural Networks and Expert Systems in Medicine and Healthcare&lt;/i&gt; 286-294&lt;br/&gt;</summary>
</entry>
<entry>
<id>http://publicationslist.org/fj.azuaje/refid88</id>
<updated>2008-05-09T13:04:23Z</updated>
<link rel='alternate' type='text/html' href='http://publicationslist.org/fj.azuaje#refid88'/>
<title type='html'>A neural network approach to coronary heart disease risk assessment based on short-term measurement of RR intervals </title>
<summary type='html'>Azuaje F, Dubitzky W, Wu X, Lopes P, Black N, Adamson K, and White J.A (1997)  &lt;i&gt;Proceedings of The IEEE Conference on Computers in Cardiology &lt;/i&gt; 53-56&lt;br/&gt;</summary>
</entry>
<entry>
<id>http://publicationslist.org/fj.azuaje/refid46</id>
<updated>2008-05-05T07:46:42Z</updated>
<link rel='alternate' type='text/html' href='http://publicationslist.org/fj.azuaje#refid46'/>
<title type='html'>Abordar la superautopista con una carretera de tierra</title>
<summary type='html'>Azuaje F (1997)  &lt;i&gt;Revista Nueva Sociedad&lt;/i&gt; 147:  132-145&lt;br/&gt;</summary>
</entry>
<entry>
<id>http://publicationslist.org/fj.azuaje/refid104</id>
<updated>2008-05-09T13:20:02Z</updated>
<link rel='alternate' type='text/html' href='http://publicationslist.org/fj.azuaje#refid104'/>
<title type='html'>Abordar la superautopista a traves de una carretera de tierra  </title>
<summary type='html'>Azuaje F (1996)  &lt;i&gt;Proceedings of II Jornadas Latinoamericanas de Estudios Sociales de la Ciencia y Tecnologia (ESOCITE 96), Caracas, pp. 16, 1996.&lt;/i&gt;&lt;br/&gt;</summary>
</entry>
<entry>
<id>http://publicationslist.org/fj.azuaje/refid102</id>
<updated>2008-05-09T13:18:42Z</updated>
<link rel='alternate' type='text/html' href='http://publicationslist.org/fj.azuaje#refid102'/>
<title type='html'>Development of a computational tool for the modelling of the axon potential </title>
<summary type='html'>Azuaje F, Carbunaru R, D’Alessandro R, and Lara E (1995)  &lt;i&gt;Acta Cientifica Venezolana, 46, pp. 241, ISSM 1315-6241&lt;/i&gt;&lt;br/&gt;</summary>
</entry>
<entry>
<id>http://publicationslist.org/fj.azuaje/refid91</id>
<updated>2008-05-09T13:07:38Z</updated>
<link rel='alternate' type='text/html' href='http://publicationslist.org/fj.azuaje#refid91'/>
<title type='html'>Interactive systems for medical signal acquisition </title>
<summary type='html'>Azuaje F, Contasti R, Materan T, Villegas G (1995)  &lt;i&gt;Proceedings of the First Conference of the Venezuelan Bioengineering Society&lt;/i&gt; &lt;br/&gt;</summary>
</entry>
<entry>
<id>http://publicationslist.org/fj.azuaje/refid103</id>
<updated>2008-05-09T13:19:19Z</updated>
<link rel='alternate' type='text/html' href='http://publicationslist.org/fj.azuaje#refid103'/>
<title type='html'>An interactive system for the acquisition of biomedical signals </title>
<summary type='html'>Azuaje F, Contasti R, and Villegas G (1994)  &lt;i&gt;Acta Cientifica Venezolana, 45, pp. 67, ISSM 1315-6241, 1994.&lt;/i&gt;&lt;br/&gt;</summary>
</entry>
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