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<feed xmlns="http://www.w3.org/2005/Atom" xml:lang="en"><id>http://publicationslist.org/data/fred/atom.xml</id><title>Fred Howell's Publications List</title>
<link rel="self" type="application/atom+xml" href="http://publicationslist.org/data/fred/atom.xml"/><link rel="alternate" type="text/html" href="http://publicationslist.org/fred"/><author><name>Fred Howell</name><uri>http://publicationslist.org/fred</uri></author><icon>$basepathfavicon.ico</icon><subtitle>Recent additions to Fred Howell's PublicationsList.org page</subtitle><logo>http://publicationslist.org/publications.png</logo><updated>2013-01-07T09:34:14Z</updated>

<entry>
<id>http://publicationslist.org/fred/refid26</id>
<updated>2009-10-18T13:28:56Z</updated>
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<title type='html'>Collaborative online annotation of musical scores for eLearning using A.nnotate.com </title>
<summary type='html'>In this paper we explore the use of a collaborative online annotation tool for enhanced teaching and research of music analysis in higher education. Manual annotation of printed scores on paper has long been the foundation of music analysis. However, collaboration between music analysts in different countries and discussions on a specific piece under analysis has always been problematic. Moving th...&lt;br/&gt;&lt;br/&gt;Christina Anagnostopoulou and Fred Howell (2009)  &lt;i&gt;Proceedings of INTED 2009&lt;/i&gt; &lt;br/&gt;</summary>
</entry>
<entry>
<id>http://publicationslist.org/fred/refid22</id>
<updated>2009-10-03T11:51:31Z</updated>
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<title type='html'>Interoperability of neuroscience modeling software: current status and future directions.</title>
<summary type='html'>Neuroscience increasingly uses computational models to assist in the exploration and interpretation of complex phenomena. As a result, considerable effort is invested in the development of software tools and technologies for numerical simulations and for the creation and publication of models. The diversity of related tools leads to the duplication of effort and hinders model reuse. Development pr...&lt;br/&gt;&lt;br/&gt;R. C. Cannon, M.­O. Gewaltig, P. Gleeson, U. S. Bhalla, H. Cornelis, M. L. Hines, F. W. Howell, E. Muller, J. R. Stiles, S. Wils, E. de Schutter (2007)  &lt;i&gt;Neuroinformatics&lt;/i&gt; 5:  (online)&lt;br/&gt;</summary>
</entry>
<entry>
<id>http://publicationslist.org/fred/refid23</id>
<updated>2009-10-18T13:39:03Z</updated>
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<title type='html'>Enhancing documents with annotations and machine-readable structured information using Notate</title>
<summary type='html'> Textensor Limited is developing tools for improving the communication and exploitation of text based information. Our main product, Notate, is a web based system that enables authors and readers to layer structured annotations on top of documents so that the resulting combination can be reliably processed automatically while maintaining the integrity of the original source and the provenance of a...&lt;br/&gt;&lt;br/&gt;Robert Cannon, Fred Howell (2007)  4th March 2007&lt;br/&gt;</summary>
</entry>
<entry>
<id>http://publicationslist.org/fred/refid21</id>
<updated>2008-02-14T08:59:48Z</updated>
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<title type='html'>MorphML: Level 1 of the  
NeuroML Standards for Neuronal Morphology Data and Model  
Specification</title>
<summary type='html'>S Crook, P Gleeson, F Howell, J Svitak, A Silver (2007)  &lt;i&gt;Neuroinformatics&lt;/i&gt; 5:  (online)&lt;br/&gt;</summary>
</entry>
<entry>
<id>http://publicationslist.org/fred/refid3</id>
<updated>2007-04-21T16:44:56Z</updated>
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<title type='html'>Catalyzer: a novel tool for integrating, managing and publishing heterogeneous bioscience data</title>
<summary type='html'>The integrative ambitions of systems biology and neuroinformatics - to construct working models of the machinery of living cells and brains - will flounder unless researchers have access to the huge amounts of diverse experimental data being collected. However, the vast majority of bioscience research data that is gathered is never made available to other researchers, partly for the want of an ade...&lt;br/&gt;&lt;br/&gt;F W Howell, R C Cannon, N H Goddard (2006)  &lt;i&gt;Concurrency Computat.: Pract. Exper.&lt;/i&gt; 19:  207-221&lt;br/&gt;</summary>
</entry>
<entry>
<id>http://publicationslist.org/fred/refid17</id>
<updated>2007-04-17T09:00:45Z</updated>
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<title type='html'>Building and running large scale computational neuroscience models</title>
<summary type='html'>F Howell, J A Grunchec (2005)  &lt;i&gt;proc. AHM 2005&lt;/i&gt; &lt;br/&gt;</summary>
</entry>
<entry>
<id>http://publicationslist.org/fred/refid18</id>
<updated>2007-04-17T09:10:22Z</updated>
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<title type='html'>Tools for integrating 3D single cell and population neuroanatomy data</title>
<summary type='html'>F Howell, N McDonnell, L Zaborsky, P Varsanyi (2005)  &lt;i&gt;AHM 2005&lt;/i&gt; &lt;br/&gt;</summary>
</entry>
<entry>
<id>http://publicationslist.org/fred/refid19</id>
<updated>2007-05-25T08:56:23Z</updated>
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<title type='html'>www.ratbrain.org : database and tools</title>
<summary type='html'>F Howell, N McDonnell, L Zaborsky, P Varsanyi (2005)  &lt;i&gt;CNS 2005&lt;/i&gt; &lt;br/&gt;</summary>
</entry>
<entry>
<id>http://publicationslist.org/fred/refid20</id>
<updated>2009-10-03T10:27:00Z</updated>
<link rel='alternate' type='text/html' href='http://publicationslist.org/fred#refid20'/>
<title type='html'>XML for model 
specification in neuroscience: An introduction and workshop summary.</title>
<summary type='html'>One of the main roles of the Neural Open Markup Language, NeuroML, is to facilitate cooperation in
building, simulating, testing and publishing models of channels, neurons and networks of neurons. MorphML,
which was developed as a common format for exchange of neural morphology data, is distributed as part of
NeuroML but can be used as a stand-alone application. In this collection of tutorials ...&lt;br/&gt;&lt;br/&gt;S Crook, D Beeman, P Gleeson, F Howell (2005)  &lt;i&gt;Brains, Minds and Media&lt;/i&gt; 1:bmm228:  &lt;br/&gt;</summary>
</entry>
<entry>
<id>http://publicationslist.org/fred/refid11</id>
<updated>2007-04-17T08:33:07Z</updated>
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<title type='html'>How do we get the data to build computational models?</title>
<summary type='html'>F W Howell, R C Cannon, N H Goddard (2004)  &lt;i&gt;Neurocomputing&lt;/i&gt; 58:  1103-1108&lt;br/&gt;</summary>
</entry>
<entry>
<id>http://publicationslist.org/fred/refid14</id>
<updated>2009-10-18T14:02:50Z</updated>
<link rel='alternate' type='text/html' href='http://publicationslist.org/fred#refid14'/>
<title type='html'>Linking computational neuroscience simulation tools -a pragmatic approach to component-based development</title>
<summary type='html'>F. Howell, R. Cannon, N. Goddard, H. Bringmann, P. Rogister, H. Cornelis  (2003)  &lt;i&gt;Neurocomputing&lt;/i&gt; 52-54:  289-294&lt;br/&gt;</summary>
</entry>
<entry>
<id>http://publicationslist.org/fred/refid24</id>
<updated>2007-05-23T11:26:44Z</updated>
<link rel='alternate' type='text/html' href='http://publicationslist.org/fred#refid24'/>
<title type='html'>Axiope tools for data management and data sharing.</title>
<summary type='html'>Many areas of biological research generate large volumes of very diverse data. Managing this data can be a difficult and time-consuming process, particularly in an academic environment where there are very limited resources for IT support staff such as database administrators. The most economical and efficient solutions are those that enable scientists with minimal IT expertise to control and oper...&lt;br/&gt;&lt;br/&gt;Nigel H Goddard, Robert C Cannon, Fred W Howell (2003)  &lt;i&gt;Neuroinformatics&lt;/i&gt; &lt;i&gt;&lt;/i&gt; &lt;i&gt;&lt;/i&gt; 1: 3 271-284&lt;br/&gt;</summary>
</entry>
<entry>
<id>http://publicationslist.org/fred/refid15</id>
<updated>2007-04-17T08:58:08Z</updated>
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<title type='html'>Scaling a slow wave sleep cortical network model using NEOSIM</title>
<summary type='html'>F. Howell, M. Bazhenov, P. Rogister, T. Sejnowski, N. Goddard (2002)  &lt;i&gt;Neurocomputing&lt;/i&gt; 44: 1 453-458&lt;br/&gt;</summary>
</entry>
<entry>
<id>http://publicationslist.org/fred/refid25</id>
<updated>2007-05-23T11:26:44Z</updated>
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<title type='html'>Non-curated distributed databases for experimental data and models in neuroscience.</title>
<summary type='html'>Neuroscience is generating vast amounts of highly diverse data which is of potential interest to researchers beyond the laboratories in which it is collected. In particular, quantitative neuroanatomical data is relevant to a wide variety of areas, including studies of development, aging, pathology and in biophysically oriented computational modelling. Moreover, the relatively discrete and well-def...&lt;br/&gt;&lt;br/&gt;R C Cannon, F W Howell, N H Goddard, E De Schutter (2002)  &lt;i&gt;Network&lt;/i&gt; &lt;i&gt;&lt;/i&gt; &lt;i&gt;&lt;/i&gt; 13: 3 415-428&lt;br/&gt;</summary>
</entry>
<entry>
<id>http://publicationslist.org/fred/refid16</id>
<updated>2007-04-17T09:19:43Z</updated>
<link rel='alternate' type='text/html' href='http://publicationslist.org/fred#refid16'/>
<title type='html'>NeuroML for Plug and Play Neuronal Modeling</title>
<summary type='html'> N. Goddard, D. Beeman, R. Cannon, H. Cornelis, M.-O. Gewaltig, G. Hood, F. Howell, P. Rogister, E. de Schutter, K. Shankar, M. Hucka (2002)  &lt;i&gt;Neurocomputing&lt;/i&gt; 44:  1077-1081&lt;br/&gt;</summary>
</entry>
<entry>
<id>http://publicationslist.org/fred/refid12</id>
<updated>2007-04-17T08:38:02Z</updated>
<link rel='alternate' type='text/html' href='http://publicationslist.org/fred#refid12'/>
<title type='html'>Towards NeuroML: model description methods for collaborative modelling in neuroscience.</title>
<summary type='html'>Biological nervous systems and the mechanisms underlying their operation exhibit astonishing complexity. Computational models of these systems have been correspondingly complex. As these models become ever more sophisticated, they become increasingly difficult to define, comprehend, manage and communicate. Consequently, for scientific understanding of biological nervous systems to progress, it is ...&lt;br/&gt;&lt;br/&gt;N H Goddard, M Hucka, F Howell, H Cornelis, K Shankar, D Beeman (2001)  &lt;i&gt;Philos Trans R Soc Lond B Biol Sci&lt;/i&gt; 356: 1412 1209-1228&lt;br/&gt;</summary>
</entry>
<entry>
<id>http://publicationslist.org/fred/refid4</id>
<updated>2007-04-17T09:17:00Z</updated>
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<title type='html'>A large scale model of the cerebellar cortex using PGENESIS</title>
<summary type='html'>F. Howell, J. Dyhrfjeld-Johnsen,  R. Maex, E. de Schutter, N. Goddard (2000)  &lt;i&gt;Neurocomputing&lt;/i&gt; 32:  1041-1046&lt;br/&gt;</summary>
</entry>
<entry>
<id>http://publicationslist.org/fred/refid13</id>
<updated>2007-10-30T12:10:17Z</updated>
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<title type='html'>Hierarchical       Architecture
    Simulation Environment</title>
<summary type='html'>F W Howell, R N Ibbett (1998)  &lt;i&gt;STATE OF THE ART IN  PERFORMANCE MODELLING AND SIMULATION&lt;/i&gt; 1-18&lt;br/&gt;</summary>
</entry>
<entry>
<id>http://publicationslist.org/fred/refid10</id>
<updated>2007-04-17T08:20:46Z</updated>
<link rel='alternate' type='text/html' href='http://publicationslist.org/fred#refid10'/>
<title type='html'>SimJava: a discrete event 
simulation library</title>
<summary type='html'>F.W. Howell, R. McNab (1998)  &lt;i&gt;proc. SCS 1998 INTERNATIONAL CONFERENCE ON WEB-BASED MODELING AND SIMULATION&lt;/i&gt; &lt;br/&gt;</summary>
</entry>
<entry>
<id>http://publicationslist.org/fred/refid9</id>
<updated>2007-04-17T08:18:36Z</updated>
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<title type='html'>An Integrated Learning Support Environment for Computer Architecture</title>
<summary type='html'>P.S. Coe,  F.W. Howell, R.N. Ibbett, R. McNab, L.M. Williams (1997)  &lt;i&gt;3rd Annual Workshop on Computer Architecture Education at HPCA-3&lt;/i&gt; &lt;br/&gt;</summary>
</entry>
<entry>
<id>http://publicationslist.org/fred/refid7</id>
<updated>2007-04-17T08:15:40Z</updated>
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<title type='html'>Reverse Profiling</title>
<summary type='html'>F W Howell (1996)  &lt;i&gt;Software Engineering for Parallel and Distributed Systems : Proceedings of the First IFIP TC10 International Workshop on Parallel and Distributed Software Engineering&lt;/i&gt; &lt;br/&gt;</summary>
</entry>
<entry>
<id>http://publicationslist.org/fred/refid5</id>
<updated>2007-04-17T08:11:46Z</updated>
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<title type='html'>HASE: A Flexible Toolset for Computer Architects</title>
<summary type='html'>R.N. Ibbett, P.E. Heywood, F.W. Howell (1996)  &lt;i&gt;The Computer Journal&lt;/i&gt; 38: 10 &lt;br/&gt;</summary>
</entry>
<entry>
<id>http://publicationslist.org/fred/refid6</id>
<updated>2007-04-17T08:13:24Z</updated>
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<title type='html'>Using Java for Discrete Event Simulation</title>
<summary type='html'>R. McNab, F.W. Howell (1996)  &lt;i&gt;Proc. Twelfth UK Computer and Telecommunications Performance Engineering Workshop (UKPEW)&lt;/i&gt; 219-228&lt;br/&gt;</summary>
</entry>
<entry>
<id>http://publicationslist.org/fred/refid8</id>
<updated>2007-04-17T08:16:45Z</updated>
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<title type='html'>Hierarchical Architecture Design and Simulation Environment</title>
<summary type='html'>F W Howell, R Williams, R N Ibbett (1994)  &lt;i&gt;MASCOTS-94&lt;/i&gt; &lt;br/&gt;</summary>
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