http://publicationslist.org/data/philipp.seibel/atom.xml Philipp Seibelhttp://publicationslist.org/philipp.seibel$basepathfavicon.icoRecent additions to Philipp Seibel's PublicationsList.org pagehttp://publicationslist.org/publications.png2008-01-10T12:19:26Z http://publicationslist.org/philipp.seibel/refid1 2008-01-10T12:09:53Z

The internal transcribed spacer 2 (ITS2) is a phylogenetic marker which has been of broad use in generic and infrageneric level classifications, as its sequence evolves comparably fast. Only recently, it became clear, that the ITS2 might be useful even for higher level systematic analyses. As the secondary structure is highly conserved within all eukaryotes it serves as a valuable template for the...<br/><br/>Jörg Schultz, Tobias Müller, Marco Achtziger, Philipp N Seibel, Thomas Dandekar, Matthias Wolf (2006) <i>Nucleic Acids Res</i> <i></i> <i></i> 34: Web Server issue W704-W707<br/>

http://publicationslist.org/philipp.seibel/refid2 2008-01-10T12:09:53Z

We have converted the hierarchically organized new higher level classification of eukaryotes with emphasis on the taxonomy of protists proposed by Adl et al. into an interactive and dynamic Java applet. The current version of the applet can be accessed via http://phylogenetics.bioapps.biozentrum.uni-wuerzburg.de/etv. We use the layout from a Degree-of-Interest tree (DOITree) that effectively displ...<br/><br/>Matthias Wolf, Philipp N Seibel, Thomas Dandekar, Denis H Lynn (2006) <i>J Eukaryot Microbiol</i> <i></i> <i></i> 53: 5 <br/>

http://publicationslist.org/philipp.seibel/refid3 2008-01-10T12:09:53Z

BACKGROUND: Today, there is a growing need in bioinformatics to combine available software tools into chains, thus building complex applications from existing single-task tools. To create such workflows, the tools involved have to be able to work with each other's data--therefore, a common set of well-defined data formats is needed. Unfortunately, current bioinformatic tools use a great variety of...<br/><br/>Philipp N Seibel, Jan Krüger, Sven Hartmeier, Knut Schwarzer, Kai Löwenthal, Henning Mersch, Thomas Dandekar, Robert Giegerich (2006) <i>BMC Bioinformatics</i> <i></i> <i></i> 7: <br/>

http://publicationslist.org/philipp.seibel/refid4 2008-01-10T12:09:53Z

BACKGROUND: In sequence analysis the multiple alignment builds the fundament of all proceeding analyses. Errors in an alignment could strongly influence all succeeding analyses and therefore could lead to wrong predictions. Hand-crafted and hand-improved alignments are necessary and meanwhile good common practice. For RNA sequences often the primary sequence as well as a secondary structure consen...<br/><br/>Philipp N Seibel, Tobias Müller, Thomas Dandekar, Jörg Schultz, Matthias Wolf (2006) <i>BMC Bioinformatics</i> <i></i> <i></i> 7: <br/>