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<feed xmlns="http://www.w3.org/2005/Atom" xml:lang="en"><id>http://publicationslist.org/data/richard.emes/atom.xml</id><title>Richard Emes's Publications List</title>
<link rel="self" type="application/atom+xml" href="http://publicationslist.org/data/richard.emes/atom.xml"/><link rel="alternate" type="text/html" href="http://publicationslist.org/richard.emes"/><author><name>Richard Emes</name><uri>http://publicationslist.org/richard.emes</uri></author><icon>$basepathfavicon.ico</icon><subtitle>Recent additions to Richard Emes's PublicationsList.org page</subtitle><logo>http://publicationslist.org/publications.png</logo><updated>2011-08-28T08:23:08Z</updated>

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<id>http://publicationslist.org/richard.emes/refid27</id>
<updated>2011-08-28T08:23:02Z</updated>
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<title type='html'>Knockdown of embryonic myosin heavy chain reveals an essential role in the morphology and function of the developing heart.</title>
<summary type='html'>The expression and function of embryonic myosin heavy chain (eMYH) has not been investigated within the early developing heart. This is despite the knowledge that other structural proteins, such as alpha and beta myosin heavy chains and cardiac alpha actin, play crucial roles in atrial septal development and cardiac function. Most cases of atrial septal defects and cardiomyopathy are not associate...&lt;br/&gt;&lt;br/&gt;Catrin Sian Rutland, Luis Polo-Parada, Elisabeth Ehler, Aziza Alibhai, Aaran Thorpe, Suganthi Suren, Richard D Emes, Bhakti Patel, Siobhan Loughna (2011)  &lt;i&gt;Development&lt;/i&gt; &lt;i&gt;&lt;/i&gt; &lt;i&gt;&lt;/i&gt; 138: 18 3955-3966&lt;br/&gt;</summary>
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<entry>
<id>http://publicationslist.org/richard.emes/refid3</id>
<updated>2011-07-28T22:03:35Z</updated>
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<title type='html'>Quantitative, high-resolution epigenetic profiling of CpG loci identifies associations with cord blood plasma homocysteine and birth weight in humans.</title>
<summary type='html'>Supplementation with folic acid during pregnancy is known to reduce the risk of neural tube defects and low birth weight. It is thought that folate and other one-carbon intermediates might secure these clinical effects via DNA methylation. We examined the effects of folate on the human methylome using quantitative interrogation of 27,578 CpG loci associated with 14,496 genes at single-nucleotide r...&lt;br/&gt;&lt;br/&gt;Anthony A Fryer, Richard D Emes, Khaled M K Ismail, Kim E Haworth, Charles Mein, William D Carroll, William E Farrell (2011)  &lt;i&gt;Epigenetics&lt;/i&gt; &lt;i&gt;&lt;/i&gt; &lt;i&gt;&lt;/i&gt; 6: 1 86-94&lt;br/&gt;</summary>
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<entry>
<id>http://publicationslist.org/richard.emes/refid2</id>
<updated>2011-07-28T22:03:35Z</updated>
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<title type='html'>The human postsynaptic density shares conserved elements with proteomes of unicellular eukaryotes and prokaryotes.</title>
<summary type='html'>The animal nervous system processes information from the environment and mediates learning and memory using molecular signaling pathways in the postsynaptic terminal of synapses. Postsynaptic neurotransmitter receptors assemble to form multiprotein complexes that drive signal transduction pathways to downstream cell biological processes. Studies of mouse and Drosophila postsynaptic proteins have i...&lt;br/&gt;&lt;br/&gt;Richard David Emes, Seth G N Grant (2011)  &lt;i&gt;Front Neurosci&lt;/i&gt; &lt;i&gt;&lt;/i&gt; &lt;i&gt;&lt;/i&gt; 5:  &lt;br/&gt;</summary>
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<entry>
<id>http://publicationslist.org/richard.emes/refid1</id>
<updated>2011-07-28T22:03:35Z</updated>
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<title type='html'>Area 51: How do Acanthamoeba invade the central nervous system?</title>
<summary type='html'>Acanthamoeba granulomatous encephalitis generally develops as a result of haematogenous spread, but it is unclear how circulating amoebae enter the central nervous system (CNS) and cause inflammation. At present, the mechanisms which Acanthamoeba use to invade this incredibly well-protected area of the CNS and produce infection are not well understood. In this paper, we propose two key virulence f...&lt;br/&gt;&lt;br/&gt;Ruqaiyyah Siddiqui, Richard Emes, Hany Elsheikha, Naveed Ahmed Khan (2011)  &lt;i&gt;Trends Parasitol&lt;/i&gt; &lt;i&gt;&lt;/i&gt; &lt;i&gt;&lt;/i&gt; 27: 5 185-189&lt;br/&gt;</summary>
</entry>
<entry>
<id>http://publicationslist.org/richard.emes/refid26</id>
<updated>2011-08-23T22:27:41Z</updated>
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<title type='html'>Adaptation to the chicken intestine in Salmonella Enteritidis PT4 studied by transcriptional analysis.</title>
<summary type='html'>The transcriptional changes that occurred in Salmonella enterica serovar Enteritidis during colonization of the alimentary tract of newly hatched chickens were studied. A whole genome oligonucleotide microarray was used to compare the expression pattern with that from bacteria cultured in nutrient broth in vitro. Amongst other changes Salmonella Pathogenicity Island (SPI)-1, SPI-2 and SPI-5 genes ...&lt;br/&gt;&lt;br/&gt;A A Dhawi, A Elazomi, M A Jones, M A Lovell, H Li, R D Emes, P A Barrow (2011)  &lt;i&gt;Vet Microbiol&lt;/i&gt; &lt;i&gt;&lt;/i&gt; &lt;i&gt;&lt;/i&gt; :  &lt;br/&gt;</summary>
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<entry>
<id>http://publicationslist.org/richard.emes/refid4</id>
<updated>2011-07-28T22:03:35Z</updated>
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<title type='html'>The Multiple Sclerosis Severity Score: associations with MC1R single nucleotide polymorphisms and host response to ultraviolet radiation.</title>
<summary type='html'>Multiple sclerosis outcome may be influenced by ultraviolet radiation and vitamin D synthesis, suggesting skin type and genes determining this phenotype are candidates for disability. However, though associations between melanocortin 1 receptor (MC1R) single nucleotide polymorphisms and disability are reported, some data are incompatible with their expected influence on skin type.&lt;br/&gt;&lt;br/&gt;Richard C Strange, Sudarshan Ramachandran, Maurice P Zeegers, Richard D Emes, Roby Abraham, Vythilingam Raveendran, Mike Boggild, Janice Gilford, Clive P Hawkins (2010)  &lt;i&gt;Mult Scler&lt;/i&gt; &lt;i&gt;&lt;/i&gt; &lt;i&gt;&lt;/i&gt; 16: 9 1109-1116&lt;br/&gt;</summary>
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<entry>
<id>http://publicationslist.org/richard.emes/refid8</id>
<updated>2011-07-28T22:03:35Z</updated>
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<title type='html'>Control of gene expression in Plasmodium falciparum - ten years on.</title>
<summary type='html'>Ten years ago this journal published a review with an almost identical title detailing how the then recent introduction of transfection technology had advanced our understanding of the molecular control of transcriptional processes in Plasmodium falciparum, particularly in terms of promoter structure and function. In the succeeding years, sequencing of several Plasmodium spp. genomes and applicati...&lt;br/&gt;&lt;br/&gt;Paul Horrocks, Eleanor Wong, Karen Russell, Richard D Emes (2009)  &lt;i&gt;Mol Biochem Parasitol&lt;/i&gt; &lt;i&gt;&lt;/i&gt; &lt;i&gt;&lt;/i&gt; 164: 1 9-25&lt;br/&gt;</summary>
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<entry>
<id>http://publicationslist.org/richard.emes/refid7</id>
<updated>2011-07-28T22:03:35Z</updated>
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<title type='html'>Mutations in radial spoke head protein genes RSPH9 and RSPH4A cause primary ciliary dyskinesia with central-microtubular-pair abnormalities.</title>
<summary type='html'>Primary ciliary dyskinesia (PCD) is a genetically heterogeneous inherited disorder arising from dysmotility of motile cilia and sperm. This is associated with a variety of ultrastructural defects of the cilia and sperm axoneme that affect movement, leading to clinical consequences on respiratory-tract mucociliary clearance and lung function, fertility, and left-right body-axis determination. We pe...&lt;br/&gt;&lt;br/&gt;Victoria H Castleman, Leila Romio, Rahul Chodhari, Robert A Hirst, Sandra C P de Castro, Keith A Parker, Patricia Ybot-Gonzalez, Richard D Emes, Stephen W Wilson, Colin Wallis, Colin A Johnson, Rene J Herrera, Andrew Rutman, Mellisa Dixon, Amelia Shoemark, Andrew Bush, Claire Hogg, R Mark Gardiner, Orit Reish, Nicholas D E Greene, Christopher O'Callaghan, Saul Purton, Eddie M K Chung, Hannah M Mitchison (2009)  &lt;i&gt;Am J Hum Genet&lt;/i&gt; &lt;i&gt;&lt;/i&gt; &lt;i&gt;&lt;/i&gt; 84: 2 197-209&lt;br/&gt;</summary>
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<entry>
<id>http://publicationslist.org/richard.emes/refid5</id>
<updated>2011-07-28T22:03:35Z</updated>
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<title type='html'>Hsp-90 and the biology of nematodes.</title>
<summary type='html'>Hsp-90 from the free-living nematode Caenorhabditis elegans is unique in that it fails to bind to the specific Hsp-90 inhibitor, geldanamycin (GA). Here we surveyed 24 different free-living or parasitic nematodes with the aim of determining whether C. elegans Hsp-90 was the exception or the norm amongst the nematodes. We combined these data with codon evolution models in an attempt to identify whe...&lt;br/&gt;&lt;br/&gt;Nik A I I N Him, Victoria Gillan, Richard D Emes, Kirsty Maitland, Eileen Devaney (2009)  &lt;i&gt;BMC Evol Biol&lt;/i&gt; &lt;i&gt;&lt;/i&gt; &lt;i&gt;&lt;/i&gt; 9:  &lt;br/&gt;</summary>
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<entry>
<id>http://publicationslist.org/richard.emes/refid6</id>
<updated>2011-07-28T22:03:35Z</updated>
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<title type='html'>LINE-1 DNA methylation is inversely correlated with cord plasma homocysteine in man: a preliminary study.</title>
<summary type='html'>Folic acid supplementation during pregnancy has known beneficial effects. It reduces risk of neural tube defects and low birth weight. Folate and other one-carbon intermediates might secure these clinical effects via DNA methylation. However, most data on the effects of folate on the epigenome is derived from animal or in vitro models. We examined the relationship between cord blood methylation an...&lt;br/&gt;&lt;br/&gt;Anthony A Fryer, Tamer M Nafee, Khaled M K Ismail, William D Carroll, Richard D Emes, William E Farrell (2009)  &lt;i&gt;Epigenetics&lt;/i&gt; &lt;i&gt;&lt;/i&gt; &lt;i&gt;&lt;/i&gt; 4: 6 394-398&lt;br/&gt;</summary>
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<entry>
<id>http://publicationslist.org/richard.emes/refid12</id>
<updated>2011-07-28T22:04:55Z</updated>
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<title type='html'>Duplicated paralogous genes subject to positive selection in the genome of Trypanosoma brucei.</title>
<summary type='html'>Whole genome studies have highlighted duplicated genes as important substrates for adaptive evolution. We have investigated adaptive evolution in this class of genes in the human parasite Trypanosoma brucei, as indicated by the ratio of non-synonymous (amino-acid changing) to synonymous (amino acid retaining) nucleotide substitution rates.&lt;br/&gt;&lt;br/&gt;Richard D Emes, Ziheng Yang (2008)  &lt;i&gt;PLoS One&lt;/i&gt; &lt;i&gt;&lt;/i&gt; &lt;i&gt;&lt;/i&gt; 3: 5 &lt;br/&gt;</summary>
</entry>
<entry>
<id>http://publicationslist.org/richard.emes/refid11</id>
<updated>2011-07-28T22:04:55Z</updated>
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<title type='html'>Evolutionary expansion and anatomical specialization of synapse proteome complexity.</title>
<summary type='html'>Understanding the origins and evolution of synapses may provide insight into species diversity and the organization of the brain. Using comparative proteomics and genomics, we examined the evolution of the postsynaptic density (PSD) and membrane-associated guanylate kinase (MAGUK)-associated signaling complexes (MASCs) that underlie learning and memory. PSD and MASC orthologs found in yeast carry ...&lt;br/&gt;&lt;br/&gt;Richard D Emes, Andrew J Pocklington, Christopher N G Anderson, Alex Bayes, Mark O Collins, Catherine A Vickers, Mike D R Croning, Bilal R Malik, Jyoti S Choudhary, J Douglas Armstrong, Seth G N Grant (2008)  &lt;i&gt;Nat Neurosci&lt;/i&gt; &lt;i&gt;&lt;/i&gt; &lt;i&gt;&lt;/i&gt; 11: 7 799-806&lt;br/&gt;</summary>
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<entry>
<id>http://publicationslist.org/richard.emes/refid10</id>
<updated>2011-07-28T22:03:35Z</updated>
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<title type='html'>Inferring function from homology.</title>
<summary type='html'>Modern molecular biology approaches often result in the accumulation of abundant biological sequence data. Ideally, the function of individual proteins predicted using such data would be determined experimentally. However, if a gene of interest has no predictable function or if the amount of data is too large to experimentally assess individual genes, bioinformatics techniques may provide addition...&lt;br/&gt;&lt;br/&gt;Richard D Emes (2008)  &lt;i&gt;Methods Mol Biol&lt;/i&gt; &lt;i&gt;&lt;/i&gt; &lt;i&gt;&lt;/i&gt; 453:  149-168&lt;br/&gt;</summary>
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<entry>
<id>http://publicationslist.org/richard.emes/refid9</id>
<updated>2011-07-28T22:03:35Z</updated>
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<title type='html'>The role of positive selection in determining the molecular cause of species differences in disease.</title>
<summary type='html'>Related species, such as humans and chimpanzees, often experience the same disease with varying degrees of pathology, as seen in the cases of Alzheimer's disease, or differing symptomatology as in AIDS. Furthermore, certain diseases such as schizophrenia, epithelial cancers and autoimmune disorders are far more frequent in humans than in other species for reasons not associated with lifestyle. Gen...&lt;br/&gt;&lt;br/&gt;Jessica J Vamathevan, Samiul Hasan, Richard D Emes, Heather Amrine-Madsen, Dilip Rajagopalan, Simon D Topp, Vinod Kumar, Michael Word, Mark D Simmons, Steven M Foord, Philippe Sanseau, Ziheng Yang, Joanna D Holbrook (2008)  &lt;i&gt;BMC Evol Biol&lt;/i&gt; &lt;i&gt;&lt;/i&gt; &lt;i&gt;&lt;/i&gt; 8:  &lt;br/&gt;</summary>
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<entry>
<id>http://publicationslist.org/richard.emes/refid14</id>
<updated>2011-07-28T22:04:55Z</updated>
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<title type='html'>Sexual selection and the adaptive evolution of mammalian ejaculate proteins.</title>
<summary type='html'>An elevated rate of substitution characterizes the molecular evolution of reproductive proteins from a wide range of taxa. Although the selective pressures explaining this rapid evolution are yet to be resolved, recent evidence implicates sexual selection as a potentially important explanatory factor. To investigate this hypothesis, we sought evidence of a high rate of adaptive gene evolution link...&lt;br/&gt;&lt;br/&gt;Steven A Ramm, Peter L Oliver, Chris P Ponting, Paula Stockley, Richard D Emes (2008)  &lt;i&gt;Mol Biol Evol&lt;/i&gt; &lt;i&gt;&lt;/i&gt; &lt;i&gt;&lt;/i&gt; 25: 1 207-219&lt;br/&gt;</summary>
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<entry>
<id>http://publicationslist.org/richard.emes/refid13</id>
<updated>2011-07-28T22:04:55Z</updated>
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<title type='html'>Evolution of NMDA receptor cytoplasmic interaction domains: implications for organisation of synaptic signalling complexes.</title>
<summary type='html'>Glutamate gated postsynaptic receptors in the central nervous system (CNS) are essential for environmentally stimulated behaviours including learning and memory in both invertebrates and vertebrates. Though their genetics, biochemistry, physiology, and role in behaviour have been intensely studied in vitro and in vivo, their molecular evolution and structural aspects remain poorly understood. To u...&lt;br/&gt;&lt;br/&gt;Tomás J Ryan, Richard D Emes, Seth Gn Grant, Noboru H Komiyama (2008)  &lt;i&gt;BMC Neurosci&lt;/i&gt; &lt;i&gt;&lt;/i&gt; &lt;i&gt;&lt;/i&gt; 9:  &lt;br/&gt;</summary>
</entry>
<entry>
<id>http://publicationslist.org/richard.emes/refid16</id>
<updated>2011-07-28T22:04:55Z</updated>
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<title type='html'>Diverse spatial, temporal, and sexual expression of recently duplicated androgen-binding protein genes in Mus musculus.</title>
<summary type='html'>The genes for salivary androgen-binding protein (ABP) subunits have been evolving rapidly in ancestors of the house mouse Mus musculus, as evidenced both by recent and extensive gene duplication and by high ratios of nonsynonymous to synonymous nucleotide substitution rates. This makes ABP an appropriate model system with which to investigate how recent adaptive evolution of paralogous genes resul...&lt;br/&gt;&lt;br/&gt;Christina M Laukaitis, Stephen R Dlouhy, Richard D Emes, Chris P Ponting, Robert C Karn (2005)  &lt;i&gt;BMC Evol Biol&lt;/i&gt; &lt;i&gt;&lt;/i&gt; &lt;i&gt;&lt;/i&gt; 5:  &lt;br/&gt;</summary>
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<entry>
<id>http://publicationslist.org/richard.emes/refid15</id>
<updated>2011-07-28T22:04:55Z</updated>
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<title type='html'>Hirudo medicinalis: a platform for investigating genes in neural repair.</title>
<summary type='html'>We have used the nervous system of the medicinal leech as a preparation to study the molecular basis of neural repair. The leech central nervous system, unlike mammalian CNS, can regenerate to restore function, and contains identified nerve cells of known function and connectivity. We have constructed subtractive cDNA probes from whole and regenerating ganglia of the ventral nerve cord and have us...&lt;br/&gt;&lt;br/&gt;W Z Wang, R D Emes, K Christoffers, J Verrall, S E Blackshaw (2005)  &lt;i&gt;Cell Mol Neurobiol&lt;/i&gt; &lt;i&gt;&lt;/i&gt; &lt;i&gt;&lt;/i&gt; 25: 2 427-440&lt;br/&gt;</summary>
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<entry>
<id>http://publicationslist.org/richard.emes/refid20</id>
<updated>2011-07-28T22:04:55Z</updated>
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<title type='html'>Identifying genes for neuron survival and axon outgrowth in Hirudo medicinalis.</title>
<summary type='html'>We have studied the molecular basis of nervous system repair in invertebrate (Hirudo medicinalis) nerve cells. Unlike in mammals, neurons in invertebrates survive injury and regrow processes to restore the connections that they held before the damage occurred. To identify genes whose expression is regulated after injury, we have used subtractive probes, constructed from regenerating and non-regene...&lt;br/&gt;&lt;br/&gt;S E Blackshaw, E J Babington, R D Emes, J Malek, W-Z Wang (2004)  &lt;i&gt;J Anat&lt;/i&gt; &lt;i&gt;&lt;/i&gt; &lt;i&gt;&lt;/i&gt; 204: 1 13-24&lt;br/&gt;</summary>
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<id>http://publicationslist.org/richard.emes/refid19</id>
<updated>2011-07-28T22:04:55Z</updated>
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<title type='html'>Genome sequence of the Brown Norway rat yields insights into mammalian evolution.</title>
<summary type='html'>The laboratory rat (Rattus norvegicus) is an indispensable tool in experimental medicine and drug development, having made inestimable contributions to human health. We report here the genome sequence of the Brown Norway (BN) rat strain. The sequence represents a high-quality 'draft' covering over 90% of the genome. The BN rat sequence is the third complete mammalian genome to be deciphered, and t...&lt;br/&gt;&lt;br/&gt;Richard A Gibbs, George M Weinstock, Michael L Metzker, Donna M Muzny, Erica J Sodergren, Steven Scherer, Graham Scott, David Steffen, Kim C Worley, Paula E Burch, Geoffrey Okwuonu, Sandra Hines, Lora Lewis, Christine DeRamo, Oliver Delgado, Shannon Dugan-Rocha, George Miner, Margaret Morgan, Alicia Hawes, Rachel Gill,  Celera, Robert A Holt, Mark D Adams, Peter G Amanatides, Holly Baden-Tillson, Mary Barnstead, Soo Chin, Cheryl A Evans, Steve Ferriera, Carl Fosler, Anna Glodek, Zhiping Gu, Don Jennings, Cheryl L Kraft, Trixie Nguyen, Cynthia M Pfannkoch, Cynthia Sitter, Granger G Sutton, J Craig Venter, Trevor Woodage, Douglas Smith, Hong-Mei Lee, Erik Gustafson, Patrick Cahill, Arnold Kana, Lynn Doucette-Stamm, Keith Weinstock, Kim Fechtel, Robert B Weiss, Diane M Dunn, Eric D Green, Robert W Blakesley, Gerard G Bouffard, Pieter J De Jong, Kazutoyo Osoegawa, Baoli Zhu, Marco Marra, Jacqueline Schein, Ian Bosdet, Chris Fjell, Steven Jones, Martin Krzywinski, Carrie Mathewson, Asim Siddiqui, Natasja Wye, John McPherson, Shaying Zhao, Claire M Fraser, Jyoti Shetty, Sofiya Shatsman, Keita Geer, Yixin Chen, Sofyia Abramzon, William C Nierman, Paul H Havlak, Rui Chen, K James Durbin, Amy Egan, Yanru Ren, Xing-Zhi Song, Bingshan Li, Yue Liu, Xiang Qin, Simon Cawley, A J Cooney, Lisa M D'Souza, Kirt Martin, Jia Qian Wu, Manuel L Gonzalez-Garay, Andrew R Jackson, Kenneth J Kalafus, Michael P McLeod, Aleksandar Milosavljevic, Davinder Virk, Andrei Volkov, David A Wheeler, Zhengdong Zhang, Jeffrey A Bailey, Evan E Eichler, Eray Tuzun, Ewan Birney, Emmanuel Mongin, Abel Ureta-Vidal, Cara Woodwark, Evgeny Zdobnov, Peer Bork, Mikita Suyama, David Torrents, Marina Alexandersson, Barbara J Trask, Janet M Young, Hui Huang, Huajun Wang, Heming Xing, Sue Daniels, Darryl Gietzen, Jeanette Schmidt, Kristian Stevens, Ursula Vitt, Jim Wingrove, Francisco Camara, M Mar Albà, Josep F Abril, Roderic Guigo, Arian Smit, Inna Dubchak, Edward M Rubin, Olivier Couronne, Alexander Poliakov, Norbert Hübner, Detlev Ganten, Claudia Goesele, Oliver Hummel, Thomas Kreitler, Young-Ae Lee, Jan Monti, Herbert Schulz, Heike Zimdahl, Heinz Himmelbauer, Hans Lehrach, Howard J Jacob, Susan Bromberg, Jo Gullings-Handley, Michael I Jensen-Seaman, Anne E Kwitek, Jozef Lazar, Dean Pasko, Peter J Tonellato, Simon Twigger, Chris P Ponting, Jose M Duarte, Stephen Rice, Leo Goodstadt, Scott A Beatson, Richard D Emes, Eitan E Winter, Caleb Webber, Petra Brandt, Gerald Nyakatura, Margaret Adetobi, Francesca Chiaromonte, Laura Elnitski, Pallavi Eswara, Ross C Hardison, Minmei Hou, Diana Kolbe, Kateryna Makova, Webb Miller, Anton Nekrutenko, Cathy Riemer, Scott Schwartz, James Taylor, Shan Yang, Yi Zhang, Klaus Lindpaintner, T Dan Andrews, Mario Caccamo, Michele Clamp, Laura Clarke, Valerie Curwen, Richard Durbin, Eduardo Eyras, Stephen M Searle, Gregory M Cooper, Serafim Batzoglou, Michael Brudno, Arend Sidow, Eric A Stone, Bret A Payseur, Guillaume Bourque, Carlos López-Otín, Xose S Puente, Kushal Chakrabarti, Sourav Chatterji, Colin Dewey, Lior Pachter, Nicolas Bray, Von Bing Yap, Anat Caspi, Glenn Tesler, Pavel A Pevzner, David Haussler, Krishna M Roskin, Robert Baertsch, Hiram Clawson, Terrence S Furey, Angie S Hinrichs, Donna Karolchik, William J Kent, Kate R Rosenbloom, Heather Trumbower, Matt Weirauch, David N Cooper, Peter D Stenson, Bin Ma, Michael Brent, Manimozhiyan Arumugam, David Shteynberg, Richard R Copley, Martin S Taylor, Harold Riethman, Uma Mudunuri, Jane Peterson, Mark Guyer, Adam Felsenfeld, Susan Old, Stephen Mockrin, Francis Collins (2004)  &lt;i&gt;Nature&lt;/i&gt; &lt;i&gt;&lt;/i&gt; &lt;i&gt;&lt;/i&gt; 428: 6982 493-521&lt;br/&gt;</summary>
</entry>
<entry>
<id>http://publicationslist.org/richard.emes/refid17</id>
<updated>2011-07-28T22:04:55Z</updated>
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<title type='html'>Comparative evolutionary genomics of androgen-binding protein genes.</title>
<summary type='html'>Allelic variation within the mouse androgen-binding protein (ABP) alpha subunit gene (Abpa) has been suggested to promote assortative mating and thus prezygotic isolation. This is consistent with the elevated evolutionary rates observed for the Abpa gene, and the Abpb and Abpg genes whose products (ABPbeta and ABPgamma) form heterodimers with ABPalpha. We have investigated the mouse sequence that ...&lt;br/&gt;&lt;br/&gt;Richard D Emes, Matthew C Riley, Christina M Laukaitis, Leo Goodstadt, Robert C Karn, Chris P Ponting (2004)  &lt;i&gt;Genome Res&lt;/i&gt; &lt;i&gt;&lt;/i&gt; &lt;i&gt;&lt;/i&gt; 14: 8 1516-1529&lt;br/&gt;</summary>
</entry>
<entry>
<id>http://publicationslist.org/richard.emes/refid18</id>
<updated>2011-07-28T22:04:55Z</updated>
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<title type='html'>Evolution and comparative genomics of odorant- and pheromone-associated genes in rodents.</title>
<summary type='html'>Chemical cues influence a range of behavioral responses in rodents. The involvement of protein odorants and odorant receptors in mediating reproductive behavior, foraging, and predator avoidance suggests that their genes may have been subject to adaptive evolution. We have estimated the consequences of selection on rodent pheromones, their receptors, and olfactory receptors. These families were ch...&lt;br/&gt;&lt;br/&gt;Richard D Emes, Scott A Beatson, Chris P Ponting, Leo Goodstadt (2004)  &lt;i&gt;Genome Res&lt;/i&gt; &lt;i&gt;&lt;/i&gt; &lt;i&gt;&lt;/i&gt; 14: 4 591-602&lt;br/&gt;</summary>
</entry>
<entry>
<id>http://publicationslist.org/richard.emes/refid22</id>
<updated>2011-07-28T22:04:55Z</updated>
<link rel='alternate' type='text/html' href='http://publicationslist.org/richard.emes#refid22'/>
<title type='html'>HmCRIP, a cysteine-rich intestinal protein, is expressed by an identified regenerating nerve cell.</title>
<summary type='html'>A Hirudo medicinalis cDNA isolated from regenerating CNS tissue at 24 h post-axotomy was identified as a leech homologue of the mammalian cysteine-rich intestinal proteins (CRIPs) and named HmCRIP. HmCRIP is up-regulated within 6 h of axotomy, peaking at 24 h. This is the first demonstration of a CRIP homologue in regenerating CNS and in a serotonergic neurone. In rodents CRIP is an important fact...&lt;br/&gt;&lt;br/&gt;R D Emes, W-Z Wang, K Lanary, S E Blackshaw (2003)  &lt;i&gt;FEBS Lett&lt;/i&gt; &lt;i&gt;&lt;/i&gt; &lt;i&gt;&lt;/i&gt; 533: 1-3 124-128&lt;br/&gt;</summary>
</entry>
<entry>
<id>http://publicationslist.org/richard.emes/refid21</id>
<updated>2011-07-28T22:04:55Z</updated>
<link rel='alternate' type='text/html' href='http://publicationslist.org/richard.emes#refid21'/>
<title type='html'>Comparison of the genomes of human and mouse lays the foundation of genome zoology.</title>
<summary type='html'>The extensive similarities between the genomes of human and model organisms are the foundation of much of modern biology, with model organism experimentation permitting valuable insights into biological function and the aetiology of human disease. In contrast, differences among genomes have received less attention. Yet these can be expected to govern the physiological and morphological distinction...&lt;br/&gt;&lt;br/&gt;Richard D Emes, Leo Goodstadt, Eitan E Winter, Chris P Ponting (2003)  &lt;i&gt;Hum Mol Genet&lt;/i&gt; &lt;i&gt;&lt;/i&gt; &lt;i&gt;&lt;/i&gt; 12: 7 701-709&lt;br/&gt;</summary>
</entry>
<entry>
<id>http://publicationslist.org/richard.emes/refid24</id>
<updated>2011-07-28T22:04:55Z</updated>
<link rel='alternate' type='text/html' href='http://publicationslist.org/richard.emes#refid24'/>
<title type='html'>Cloning and characterisation of mmc-1, a microfilarial-specific gene, from Brugia pahangi.</title>
<summary type='html'>Nine differentially expressed genes were cloned from Brugia pahangi in a screen which sought to identify cDNAs that were differentially expressed between the microfilariae from the mammalian host and the mosquito vector. One gene (mmc-1), that was up-regulated in mammalian-derived microfilariae, was characterised in detail. RT-PCR analysis demonstrated that mmc-1 was specific to the microfilarial ...&lt;br/&gt;&lt;br/&gt;Richard Emes, Fiona Thompson, Joyce Moore, Xingxing Zang, Eileen Devaney (2002)  &lt;i&gt;Int J Parasitol&lt;/i&gt; &lt;i&gt;&lt;/i&gt; &lt;i&gt;&lt;/i&gt; 32: 4 415-424&lt;br/&gt;</summary>
</entry>
<entry>
<id>http://publicationslist.org/richard.emes/refid23</id>
<updated>2011-07-28T22:04:55Z</updated>
<link rel='alternate' type='text/html' href='http://publicationslist.org/richard.emes#refid23'/>
<title type='html'>Initial sequencing and comparative analysis of the mouse genome.</title>
<summary type='html'>The sequence of the mouse genome is a key informational tool for understanding the contents of the human genome and a key experimental tool for biomedical research. Here, we report the results of an international collaboration to produce a high-quality draft sequence of the mouse genome. We also present an initial comparative analysis of the mouse and human genomes, describing some of the insights...&lt;br/&gt;&lt;br/&gt;Robert H Waterston, Kerstin Lindblad-Toh, Ewan Birney, Jane Rogers, Josep F Abril, Pankaj Agarwal, Richa Agarwala, Rachel Ainscough, Marina Alexandersson, Peter An, Stylianos E Antonarakis, John Attwood, Robert Baertsch, Jonathon Bailey, Karen Barlow, Stephan Beck, Eric Berry, Bruce Birren, Toby Bloom, Peer Bork, Marc Botcherby, Nicolas Bray, Michael R Brent, Daniel G Brown, Stephen D Brown, Carol Bult, John Burton, Jonathan Butler, Robert D Campbell, Piero Carninci, Simon Cawley, Francesca Chiaromonte, Asif T Chinwalla, Deanna M Church, Michele Clamp, Christopher Clee, Francis S Collins, Lisa L Cook, Richard R Copley, Alan Coulson, Olivier Couronne, James Cuff, Val Curwen, Tim Cutts, Mark Daly, Robert David, Joy Davies, Kimberly D Delehaunty, Justin Deri, Emmanouil T Dermitzakis, Colin Dewey, Nicholas J Dickens, Mark Diekhans, Sheila Dodge, Inna Dubchak, Diane M Dunn, Sean R Eddy, Laura Elnitski, Richard D Emes, Pallavi Eswara, Eduardo Eyras, Adam Felsenfeld, Ginger A Fewell, Paul Flicek, Karen Foley, Wayne N Frankel, Lucinda A Fulton, Robert S Fulton, Terrence S Furey, Diane Gage, Richard A Gibbs, Gustavo Glusman, Sante Gnerre, Nick Goldman, Leo Goodstadt, Darren Grafham, Tina A Graves, Eric D Green, Simon Gregory, Roderic Guigó, Mark Guyer, Ross C Hardison, David Haussler, Yoshihide Hayashizaki, LaDeana W Hillier, Angela Hinrichs, Wratko Hlavina, Timothy Holzer, Fan Hsu, Axin Hua, Tim Hubbard, Adrienne Hunt, Ian Jackson, David B Jaffe, L Steven Johnson, Matthew Jones, Thomas A Jones, Ann Joy, Michael Kamal, Elinor K Karlsson, Donna Karolchik, Arkadiusz Kasprzyk, Jun Kawai, Evan Keibler, Cristyn Kells, W James Kent, Andrew Kirby, Diana L Kolbe, Ian Korf, Raju S Kucherlapati, Edward J Kulbokas, David Kulp, Tom Landers, J P Leger, Steven Leonard, Ivica Letunic, Rosie Levine, Jia Li, Ming Li, Christine Lloyd, Susan Lucas, Bin Ma, Donna R Maglott, Elaine R Mardis, Lucy Matthews, Evan Mauceli, John H Mayer, Megan McCarthy, W Richard McCombie, Stuart McLaren, Kirsten McLay, John D McPherson, Jim Meldrim, Beverley Meredith, Jill P Mesirov, Webb Miller, Tracie L Miner, Emmanuel Mongin, Kate T Montgomery, Michael Morgan, Richard Mott, James C Mullikin, Donna M Muzny, William E Nash, Joanne O Nelson, Michael N Nhan, Robert Nicol, Zemin Ning, Chad Nusbaum, Michael J O'Connor, Yasushi Okazaki, Karen Oliver, Emma Overton-Larty, Lior Pachter, Genís Parra, Kymberlie H Pepin, Jane Peterson, Pavel Pevzner, Robert Plumb, Craig S Pohl, Alex Poliakov, Tracy C Ponce, Chris P Ponting, Simon Potter, Michael Quail, Alexandre Reymond, Bruce A Roe, Krishna M Roskin, Edward M Rubin, Alistair G Rust, Ralph Santos, Victor Sapojnikov, Brian Schultz, Jörg Schultz, Matthias S Schwartz, Scott Schwartz, Carol Scott, Steven Seaman, Steve Searle, Ted Sharpe, Andrew Sheridan, Ratna Shownkeen, Sarah Sims, Jonathan B Singer, Guy Slater, Arian Smit, Douglas R Smith, Brian Spencer, Arne Stabenau, Nicole Stange-Thomann, Charles Sugnet, Mikita Suyama, Glenn Tesler, Johanna Thompson, David Torrents, Evanne Trevaskis, John Tromp, Catherine Ucla, Abel Ureta-Vidal, Jade P Vinson, Andrew C Von Niederhausern, Claire M Wade, Melanie Wall, Ryan J Weber, Robert B Weiss, Michael C Wendl, Anthony P West, Kris Wetterstrand, Raymond Wheeler, Simon Whelan, Jamey Wierzbowski, David Willey, Sophie Williams, Richard K Wilson, Eitan Winter, Kim C Worley, Dudley Wyman, Shan Yang, Shiaw-Pyng Yang, Evgeny M Zdobnov, Michael C Zody, Eric S Lander (2002)  &lt;i&gt;Nature&lt;/i&gt; &lt;i&gt;&lt;/i&gt; &lt;i&gt;&lt;/i&gt; 420: 6915 520-562&lt;br/&gt;</summary>
</entry>
<entry>
<id>http://publicationslist.org/richard.emes/refid25</id>
<updated>2011-07-28T22:04:55Z</updated>
<link rel='alternate' type='text/html' href='http://publicationslist.org/richard.emes#refid25'/>
<title type='html'>A new sequence motif linking lissencephaly, Treacher Collins and oral-facial-digital type 1 syndromes, microtubule dynamics and cell migration.</title>
<summary type='html'>A previously unidentified sequence motif has been identified in the products of genes mutated in Miller-Dieker lissencephaly, Treacher Collins, oral-facial-digital type 1 and contiguous syndrome ocular albinism with late onset sensorineural deafness syndromes. An additional homologous motif was detected in a gene product fused to the fibroblast growth factor receptor type 1 in patients with an aty...&lt;br/&gt;&lt;br/&gt;R D Emes, C P Ponting (2001)  &lt;i&gt;Hum Mol Genet&lt;/i&gt; &lt;i&gt;&lt;/i&gt; &lt;i&gt;&lt;/i&gt; 10: 24 2813-2820&lt;br/&gt;</summary>
</entry>
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