http://publicationslist.org/data/shannon.becker/atom.xml Shannon Beckerhttp://publicationslist.org/shannon.becker$basepathfavicon.icoRecent additions to Shannon Becker's PublicationsList.org pagehttp://publicationslist.org/publications.png2012-05-10T18:07:18Z http://publicationslist.org/shannon.becker/refid8 2012-05-10T18:04:43Z

The emergence of genome-integrated molecular cytogenetic resources allows for comprehensive comparative analysis of gross karyotype architecture across related species. The identification of evolutionarily conserved chromosome segment (ECCS) boundaries provides deeper insight into the process of chromosome evolution associated with speciation. We evaluated the genome-wide distribution and relativ...<br/><br/>Shannon E Duke Becker, Rachael Thomas, Vladimir A Trifonov, Robert K Wayne, Alexander S Graphodatsky, Matthew Breen. (2011) <i>Chromosome Research</i> 19: 6 685-708<br/>

http://publicationslist.org/shannon.becker/refid1 2009-10-09T18:52:16Z

Numerous attributes render the domestic dog a highly pertinent model for cancer-associated gene discovery. We performed microarray-based comparative genomic hybridization analysis of 60 spontaneous canine intracranial tumors to examine the degree to which dog and human patients exhibit aberrations of ancestrally related chromosome regions, consistent with a shared pathogenesis. Canine gliomas and ...<br/><br/>Rachael Thomas, Shannon E Duke, Huixia J Wang, Tessa E Breen, Robert J Higgins, Keith E Linder, Peter Ellis, Cordelia F Langford, Peter J Dickinson, Natasha J Olby, Matthew Breen (2009) <i>Journal of Neurooncology</i> 94: 3 333-349<br/>

http://publicationslist.org/shannon.becker/refid2 2009-10-09T18:48:48Z

Molecular cytogenetic studies have been instrumental in defining the nature of numerical and structural chromosome changes in human cancers, but their significance remains to be fully understood. The emergence of high quality genome assemblies for several model organisms provides exciting opportunities to develop novel genome-integrated molecular cytogenetic resources that now permit a comparative...<br/><br/>Rachael Thomas, Shannon E Duke, E K Karlsson, A Evans, P Ellis, K Lindblad-Toh, C F Langford, M Breen (2008) <i>Cytogenetic and Genome Research</i> 122: 2 110-121<br/>

http://publicationslist.org/shannon.becker/refid3 2009-10-09T18:52:53Z

The generation of a 7.5x dog genome assembly provides exciting new opportunities to interpret tumor-associated chromosome aberrations at the biological level. We present a genomic microarray for array comparative genomic hybridization (aCGH) analysis in the dog, comprising 275 bacterial artificial chromosome (BAC) clones spaced at intervals of approximately 10 Mb. Each clone has been positioned ac...<br/><br/>Rachael Thomas, Shannon E Duke, S. K Bloom, Tessa Breen, Andrea C Young, E Feiste, E. L Seiser, P.-C Tsai, Cordelia F Langford, P Ellis, Elinor K Karlsson, Kerstin Lindblad-Toh, Matthew Breen (2007) <i>Journal of Heredity</i> 98: 5 474-484<br/>

http://publicationslist.org/shannon.becker/refid5 2009-10-09T19:01:00Z

We report a high-quality draft of the genome sequence of the grey, short-tailed opossum (Monodelphis domestica). As the first metatherian (‘marsupial’) species to be sequenced, the opossum provides a unique perspective on the organization and evolution of mammalian genomes. Distinctive features of the opossum chromosomes provide support for recent theories about genome evolution and func...<br/><br/>Tarjei S Mikkelsen, Matthew J Wakefield, Bronwen Aken, Chris T Amemiya, Jean L Chang, Shannon E Duke, Manuel Garber, Andrew J Gentles, Leo Goodstadt, Andreas Heger, Jerzy Jurka, Michael Kamal, Evan Mauceli, Stephen M. J Searle, Theodore Sharpe, Michelle L Baker, Mark A Batzer, Panayiotis V Benos, Katherine Belov, Michele Clamp, April Cook, James Cuff, Radhika Das, Lance S Davidow, Janine E Deakin, Melissa J Fazzari, Jacob L Glass, Manfred Grabherr, John M Greally, Wanjun Gu, Timothy A Hore, Gavin A Huttley, Michael Kleber, Randy L Jirtle, Edda Koina, Jeannie T Lee, Shaun Mahony, Marco A Marra, Robert D Miller, Robert D Nicholls, Mayumi Oda, Anthony T Papenfuss, Zuly E Parra, David D Pollock, David A Ray, Jacqueline E Schein, Terence P Speed, Katherine Thompson, John L Vandeberg, Claire M Wade, Jerilyn A Walker, Paul D Waters, Caleb Webber, Jennifer R Weidman, Xiaohui Xie, Michael C Zody, Jennifer Baldwin, Amr Abdouelleil, Jamal Abdulkadir, Adal Abebe, Brikti Abera, Justin Abreu, St Christophe Acer, Lynne Aftuck, Allen Alexander, Peter An, Erica Anderson, Scott Anderson, Harindra Arachchi, Marc Azer, Pasang Bachantsang, Andrew Barry, Tashi Bayul, Aaron Berlin, Daniel Bessette, Toby Bloom, Jason Blye, Leonid Boguslavskiy, Claude Bonnet, Boris Boukhgalter, Imane Bourzgui, Adam Brown, Patrick Cahill, Sheridon Channer, Yama Cheshatsang, Lisa Chuda, Mieke Citroen, Alville Collymore, Patrick Cooke, Maura Costello, Katie D'aco, Riza Daza, Georgius De Haan, Stuart Degray, Christina Demaso, Norbu Dhargay, Kimberly Dooley, Erin Dooley, Missole Doricent, Passang Dorje, Kunsang Dorjee, Alan Dupes, Richard Elong, Jill Falk, Abderrahim Farina, Susan Faro, Diallo Ferguson, Sheila Fisher, Chelsea D Foley, Alicia Franke, Dennis Friedrich, Loryn Gadbois, Gary Gearin, Christina R Gearin, Georgia Giannoukos, Tina Goode, Joseph Graham, Edward Grandbois, Sharleen Grewal, Kunsang Gyaltsen, Nabil Hafez, Birhane Hagos, Jennifer Hall, Charlotte Henson, Andrew Hollinger, Tracey Honan, Monika D Huard, Leanne Hughes, Brian Hurhula, M. Erii Husby, Asha Kamat, Ben Kanga, Seva Kashin, Dmitry Khazanovich, Peter Kisner, Krista Lance, Marcia Lara, William Lee, Niall Lennon, Frances Letendre, Rosie Levine, Alex Lipovsky, Xiaohong Liu, Jinlei Liu, Shangtao Liu, Tashi Lokyitsang, Yeshi Lokyitsang, Rakela Lubonja, Annie Lui, Pen Macdonald, Vasilia Magnisalis, Kebede Maru, Charles Matthews, William Mccusker, Susan Mcdonough, Teena Mehta, James Meldrim, Louis Meneus, Oana Mihai, Atanas Mihalev, Tanya Mihova, Rachel Mittelman, Valentine Mlenga, Anna Montmayeur, Leonidas Mulrain, Adam Navidi, Jerome Naylor, Tamrat Negash, Thu Nguyen, Nga Nguyen, Robert Nicol, Choe Norbu, Nyima Norbu, Nathaniel Novod, Barry O'neill, Sahal Osman, Eva Markiewicz, Otero L Oyono, Christopher Patti, Pema Phunkhang, Fritz Pierre, Margaret Priest, Sujaa Raghuraman, Filip Rege, Rebecca Reyes, Cecil Rise, Peter Rogov, Keenan Ross, Elizabeth Ryan, Sampath Settipalli, Terrance Shea, Ngawang Sherpa, Lu Shi, Diana Shih, Todd Sparrow, Jessica Spaulding, John Stalker, Nicole Stange-Thomann, Sharon Stavropoulos, Catherine Stone, Christopher Strader, Senait Tesfaye, Talene Thomson, Yama Thoulutsang, Dawa Thoulutsang, Kerri Topham, Ira Topping, Tsamla Tsamla, Helen Vassiliev, Andy Vo, Tsering Wangchuk, Tsering Wangdi, Michael Weiand, Jane Wilkinson, Adam Wilson, Shailendra Yadav, Geneva Young, Qing Yu, Lisa Zembek, Danni Zhong, Andrew Zimmer, Zac Zwirko, David B Jaffe, Pablo Alvarez, William Brockman, Jonathan Butler, Chee-Wye Chin, Sante Gnerre, Iain Maccallum, Jennifer A. Marshall Graves, Chris P Ponting, Matthew Breen, Paul B Samollow, Eric S Lander, Kerstin Lindblad-Toh (2007) <i>Nature</i> 447: 7141 167-177<br/>

http://publicationslist.org/shannon.becker/refid7 2009-10-09T19:10:57Z

X-chromosome inactivation (XCI) evolved in mammals to deal with X-chromosome dosage imbalance between the XX female and the XY male. In eutherian mammals, random XCI of the soma requires a master regulatory locus known as the 'X-inactivation center' (XIC/Xic), wherein lies the noncoding XIST/Xist silencer RNA and its regulatory antisense Tsix gene. By contrast, marsupial XCI is imprinted to occur ...<br/><br/>Lance S Davidow, Matthew Breen, Shannon E Duke, Paul B Samollow, John R Mccarrey, Jeannie T Lee (2007) <i>Chromosome Research</i> 15: 2 137-146<br/>

http://publicationslist.org/shannon.becker/refid6 2009-10-09T19:07:06Z

The generation of high-quality genome assemblies for numerous species is advancing at a rapid pace. As the number of genome assemblies increases, so does our ability to investigate genome relationships and their contributions to unraveling complex biological, evolutionary, and biomedical processes. A key process in the generation of a genome assembly is to determine and verify the precise physical...<br/><br/>Shannon E Duke, Paul B Samollow, Evan Mauceli, Kerstin Lindblad-Toh, Matthew Breen (2007) <i>Chromosome Research</i> 15: 3 361-370<br/>

http://publicationslist.org/shannon.becker/refid4 2009-10-09T18:56:34Z

A novel canine lymphoma cell line, OSW, was established from the malignant pleural effusion of a dog with peripheral T-cell lymphoma. The immunoprofile as determined by flow cytometry was as follows: positive for CD45, CD49d, CD18, CD11a; weakly positive for CD11b, CD11c, CD11d; and negative for CD45RA, CD1a, CD1c, CD3, TCRalphabeta, TCRgammadelta, CD4, CD5, CD8a, CD8b, CD90(Thy1), CD21, MHCII, CD...<br/><br/>W Kisseberth, M Nadella, Matthew Breen, Rachael Thomas, Shannon E Duke, S Murahari, C Kosarek, W Vernau, A Avery, M Burkhard (2007) <i>Leukemia Research</i> 31: 12 1709-1720<br/>