hosted by
publicationslist.org
    

Gabriele Vaccari


gabriele.vaccari@iss.it

Journal articles

2009
G Vaccari, C H Panagiotidis, C Acin, S Peletto, F Barillet, P Acutis, A Bossers, J Langeveld, L van Keulen, T Sklaviadis, J J Badiola, O Andreoletti, M H Groschup, U Agrimi, J Foster, W Goldmann (2009)  State-of-the-art review of goat TSE in the European Union, with special emphasis on PRNP genetics and epidemiology   VETERINARY RESEARCH 40: 79. - SEP  
Abstract: Scrapie is a fatal, neurodegenerative disease of sheep and goats. It is also the earliest known member in the family of diseases classified as transmissible spongiform encephalopathies (TSE) or prion diseases, which includes Creutzfeldt-Jakob disease in humans, bovine spongiform encephalopathy (BSE), and chronic wasting disease in cervids. The recent revelation of naturally occurring BSE in a goat has brought the issue of TSE in goats to the attention of the public. In contrast to scrapie, BSE presents a proven risk to humans. The risk of goat BSE, however, is difficult to evaluate, as our knowledge of TSE in goats is limited. Natural caprine scrapie has been discovered throughout Europe, with reported cases generally being greatest in countries with the highest goat populations. As with sheep scrapie, susceptibility and incubation period duration of goat scrapie are most likely controlled by the prion protein (PrP) gene (PRNP). Like the PRNP of sheep, the caprine PRNP shows significantly greater variability than that of cattle and humans. Although PRNP variability in goats differs from that observed in sheep, the two species share several identical alleles. Moreover, while the ARR allele associated with enhancing resistance in sheep is not present in the goat PRNP, there is evidence for the existence of other PrP variants related to resistance. This review presents the current knowledge of the epidemiology of caprine scrapie within the major European goat populations, and compiles the current data on genetic variability of PRNP.
Notes: Times Cited: 1
G Vaccari, G Scavia, M Sala, G Cosseddu, B Chiappini, M Conte, E Esposito, R Lorenzetti, G Perfetti, P Marconi, F Scholl, K Barbaro, A Bella, R Nonno, U Agrimi (2009)  Protective effect of the AT(137)RQ and ARQK(176) PrP alleles against classical scrapie in Sarda breed sheep   VETERINARY RESEARCH 40: 41. - MAY  
Abstract: The susceptibility of sheep to scrapie is under the control of the host's prion protein (PrP) gene and is also influenced by the strain of the agent. PrP polymorphisms at codons 136 (A/V), 154 (R/H) and 171 (Q/R/H) are the main determinants of susceptibility/resistance of sheep to classical scrapie. They are combined in four main variants of the wild-type ARQ allele: VRQ, AHQ, ARH and ARR. Breeding programmes have been undertaken on this basis in the European Union and the USA to increase the frequency of the resistant ARR allele in sheep populations. Herein, we report the results of a multi-flock study showing the protective effect of polymorphisms other than those at codons 136, 154 and 171 in Sarda breed sheep. All ARQ/ARQ affected sheep (n = 154) and 378 negative ARQ/ARQ controls from four scrapie outbreaks were submitted to sequencing of the PrP gene. The distribution of variations other than those at the standard three codons, between scrapie cases and negative controls, was statistically different in all flocks. In particular, the AT(137)RQ and ARQK(176) alleles showed a clear protective effect. This is the first study demonstrating a protective influence of alleles other than ARR under field conditions. If further investigations in other sheep breeds and with other scrapie sources confirm these findings, the availability of various protective alleles in breeding programmes of sheep for scrapie resistance could be useful in breeds with a low frequency of the ARR allele and would allow maintaining a wider variability of the PrP gene.
Notes: Times Cited: 2
S Colussi, G Vaccari, C Maurella, C Bona, R Lorenzetti, P Troiano, F Casalinuovo, A Di Sarno, M G Maniaci, F Zuccon, R Nonno, C Casalone, M Mazza, G Ru, M Caramelli, U Agrimi, P L Acutis (2009)  The AHQ allele is a risk factor for atypical scrapie Nor98 in goat   LARGE ANIMAL REVIEW 15: 14. 61-64 APR  
Abstract: In 1998 an atypical form of scrapie was first detected in sheep in Norway and nowadays it is described all over Europe; atypical scrapie in goats was instead reported only in France, Spain, Switzerland and Italy. PRNP polymorphisms, already known for their association to susceptibility/resistance to classical scrapie in sheep, are also involved in atypical scrapie. In particular the two alleles AHQ and AF(141) RQ represent risk factors for atypical scrapie in sheep. The AHQ allele was already described in atypical scrapie affected goats but statistical analysis of the association between Nor98 and goat PRNP polymorphisms has not been reported previously. The aim of this study was to fill this gap carrying out a case-control study on 8 affected goats and 246 negative goats belonging to 8 Italian atypical scrapie Nor98 outbreaks. Results obtained applying chi-square test showed a significant association between AHQ allele and the disease (p-value=0,002). In light of the data reported in this study, the strategy based on the selective culling of susceptible goats could be an effective measure to decrease the risk of atypical scrapie Nor98 inside the outbreaks.
Notes: Times Cited: 0
2008
D Frezza, V Giambra, F Chegdani, C Fontana, G Maccabiani, N Losio, E Faggionato, B Chiappini, G Vaccari, C Von Holst, L Lanni, S Saccares, P Ajmone-Marsan (2008)  Standard and Light-Cycler PCR methods for animal DNA species detection in animal feedstuffs   INNOVATIVE FOOD SCIENCE & EMERGING TECHNOLOGIES 9: 29. 18-23 JAN  
Abstract: In this work four species-specific primers and probes were designed and evaluated for the detection and quantification of bovine, ovine, swine and chicken mitochondrial DNA in feeds. PCR primers were optimized using conventional and Real Time PCR, to detect short species-specific sequences amplifiable from heat treated material. Both methods confirmed the high specificity of the primers designed. Real time quantitative PCR assay allowed the detection of as few as 0.01 ng and 0.05 ng of ovine and bovine genomic DNA, respectively. The detection limit for swine and chicken genomic DNA was 0.5 ng. Sensitivity levels observed in DNA extracted from meat samples processed according to EU legislation were different compared to those in genomic DNAs previously described. They resulted in swine 5 fg of MBM DNA, in chicken 25 ng, in ovine and bovine 50 ng. We confirmed the efficiency and specificity of primers in RT-PCR to detect 0.5% of bovine, ovine, swine and chicken MBM in contaminated feedstuffs. (C) 2007 Elsevier Ltd. All rights reserved.
Notes: Times Cited: 3
U Agrimi, R Nonno, G Dell'Omo, M A Di Bari, M Conte, B Chiappini, E Esposito, G Di Guardo, O Windl, G Vaccari, H P Lipp (2008)  Prion protein amino acid determinants of differential susceptibility and molecular feature of prion strains in mice and voles   PLOS PATHOGENS 4: 31. - JUL  
Abstract: The bank vole is a rodent susceptible to different prion strains from humans and various animal species. We analyzed the transmission features of different prions in a panel of seven rodent species which showed various degrees of phylogenetic affinity and specific prion protein (PrP) sequence divergences in order to investigate the basis of vole susceptibility in comparison to other rodent models. At first, we found a differential susceptibility of bank and field voles compared to C57Bl/6 and wood mice. Voles showed high susceptibility to sheep scrapie but were resistant to bovine spongiform encephalopathy, whereas C57Bl/6 and wood mice displayed opposite features. Infection with mouse-adapted scrapie 139A was faster in voles than in C57Bl/6 and wood mice. Moreover, a glycoprofile change was observed in voles, which was reverted upon back passage to mice. All strains replicated much faster in voles than in mice after adapting to the new species. PrP sequence comparison indicated a correlation between the transmission patterns and amino acids at positions 154 and 169 (Y and S in mice, N and N in voles). This correlation was confirmed when inoculating three additional rodent species: gerbils, spiny mice and oldfield mice with sheep scrapie and 139A. These rodents were chosen because oldfield mice do have the 154N and 169N substitutions, whereas gerbil and spiny mice do not have them. Our results suggest that PrP residues 154 and 169 drive the susceptibility, molecular phenotype and replication rate of prion strains in rodents. This might have implications for the assessment of host range and molecular traceability of prion strains, as well as for the development of improved animal models for prion diseases.
Notes: Times Cited: 7
M A Di Bari, F Chianini, G Vaccari, E Esposito, M Conte, S L Eaton, S Hamilton, J Finlayson, P J Steele, M P Dagleish, H W Reid, M Bruce, M Jeffrey, U Agrimi, R Nonno (2008)  The bank vole (Myodes glareolus) as a sensitive bioassay for sheep scrapie   JOURNAL OF GENERAL VIROLOGY 89: 45. 2975-2985 DEC  
Abstract: Despite intensive studies on sheep scrapie, a number of questions remain unanswered, such as the natural mode of transmission and the amount of infectivity which accumulates in edible tissues at different stages of scrapie infection. Studies using the mouse model proved to be useful for recognizing scrapie strain diversity, but the low sensitivity of mice to some natural scrapie isolates hampered further investigations. To investigate the sensitivity of bank voles (Myodes glareolus) to scrapie, we performed end-point titrations from two unrelated scrapie sources. Similar titres [10(5.5) ID50 U g(-1) and 10(5.8) ID50 U g(-1), both intracerebrally (i.c.)] were obtained, showing that voles can detect infectivity up to 3-4 orders of magnitude lower when compared with laboratory mice. We further investigated the relationships between PrPSc molecular characteristics, strain and prion titre in the brain and tonsil of the same scrapie-affected sheep. We found that protease-resistant PrPSc fragments (Prp(res)) from brain and tonsil had different molecular features, but induced identical disease phenotypes in voles. The infectivity titre of the tonsil estimated by incubation time assay was 10(4.8) i.c. ID50 U g(-1), i.e. fivefold less than the brain. This compared well with the relative Prp(res) content, which was 8.8-fold less in tonsil than in brain. Our results suggest that brain and tonsil harboured the same prion strain showing different glycoprofiles in relation to the different cellular/tissue types in which it replicated, and that a PrPSc-based estimate of scrapie infectivity in sheep tissues could be achieved by combining sensitive PrPres detection methods and bioassay in voles.
Notes: Times Cited: 3
S Colussi, G Vaccari, C Maurella, C Bona, R Lorenzetti, P Troian, F Casalinuovo, A Di Sarno, M G Maniaci, F Zuccon, R Nonno, C Casalone, M Mazza, G Ru, M Caramelli, U Agrimi, P L Acutis (2008)  Histidine at codon 154 of the prion protein gene is a risk factor for Nor98 scrapie in goats   JOURNAL OF GENERAL VIROLOGY 89: 30. 3173-3176 DEC  
Abstract: Prion protein gene (PRNP) polymorphisms are involved in modulating the appearance of atypical/Nor98 scrapie in sheep, with the alleles AHQ and AF(141)RQ strongly associated with occurrence of the disease. The presence of histidine at codon 154 has also been detected in Nor98-affected goats, but statistical analysis of the association between Nor98 and goat PRNP polymorphisms has not been reported previously. Here, a case-control study was carried out on eight Nor98-positive goats and 246 negative herdmates belonging to eight Italian Nor98 scrapie outbreaks. The results revealed that histidine at codon 154 is also strongly associated
Notes: Times Cited: 1
2007
G Mangino, Z A Percario, G Fiorucci, G Vaccari, S Manrique, G Romeo, M Federico, M Geyer, E Affabris (2007)  In vitro treatment of human monocytes/macrophages with myristoylated recombinant Nef of human immunodeficiency virus type 1 leads to the activation of mitogen-activated protein kinases, I kappa B kinases, and interferon regulatory factor 3 and to the release of beta interferon   JOURNAL OF VIROLOGY 81: 105. 2777-2791 MAR  
Abstract: The viral protein Nef is a virulence factor that plays multiple roles during the early and late phases of human immunodeficiency virus (HM replication. Nef regulates the cell surface expression of critical proteins (including down-regulation of CD4 and major histocompatibility complex class 1), T-cell receptor signaling, and apoptosis, inducing proapoptotic effects in uninfected bystander cells and antiapoptotic effects in infected cells. It has been proposed that Nef intersects the CD40 ligand signaling pathway in macrophages, leading to modification in the pattern of secreted factors that appear able to recruit and activate T lymphocytes, rendering them susceptible to HIV infection. There is also increasing evidence that in vitro cell treatment with Nef induces signaling effects. Exogenious Nef treatment is able to induce apoptosis in uninfected T cells, maturation in dendritic cells, and suppression of CD40-dependent immunoglobulin class switching in B cells. Previously, we reported that Nef treatment of primary human monocyte-derived macrophages (MDMs) induces a cycloheximide-independent activation of NF-kappa B and the synthesis and secretion of a set of chemokines/cytokines that activate STAT1 and STAT3. Here, we show that Nef treatment is capable of hijacking cellular signaling pathways, inducing a very rapid regulatory response in MDMs that is characterized by the rapid and transient phosphorylation of the alpha and beta subunits of the I kappa B kinase complex and of JNK, ERK1/2, and p38 mitogen-activated protein kinase family members. In addition, we have observed the activation of interferon regulatory factor 3, leading to the synthesis of beta interferon mRNA and protein, which in turn induces STAT2 phosphorylation. All of these effects require Nef myristoylation.
Notes: Times Cited: 9
C Cartoni, M E Schinina, B Maras, R Nonno, G Vaccari, M Di Bari, M Conte, A De Pascalis, S Principe, F Cardone, M Pocchiari, U Agrimi (2007)  Quantitative profiling of the pathological prion protein allotypes in bank voles by liquid chromatography-mass spectrometry   JOURNAL OF CHROMATOGRAPHY B-ANALYTICAL TECHNOLOGIES IN THE BIOMEDICAL AND LIFE SCIENCES 849: 28. 302-306 APR 15  
Abstract: The conversion of the cellular prion protein (PrPC) into a misfolded isoform (PrPTSE) that accumulates in the brain of affected individuals is the key feature of transmissible spongiform encephalopaties (TSEs). Susceptibility to TSEs is influenced by polymorphisms of the prion gene suggesting that the presence of certain amino acid residues may facilitate the pathological conversion. In this work, we describe a quantitative, fast and reliable HPLC-MS method that allowed to demonstrate that in the brain of 109(Met/Ile) heterozygous bank voles infected with the mouse adapted scrapie strain 139A, there are comparable amounts of PrPTSE with methionine or isoleucine in position 109, suggesting that in this TSE model the two allotypes have similar rates of accumulation. This method can be easily adapted for the quantitative determination of PrP allotypes in the brain of other natural or experimental TSE models. (c) 2006 Elsevier B.V. All rights reserved.
Notes: Times Cited: 1
M Vascellari, R Nonno, F Mutinelli, M Bigolaro, M A Di Bari, E Melchiotti, S Marcon, C D'Agostino, G Vaccari, M Conte, L De Grossi, F Rosone, F Giordani, U AgriMi (2007)  PrPSc in salivary glands of scrapie-affected sheep   JOURNAL OF VIROLOGY 81: 23. 4872-4876 MAY  
Abstract: The salivary glands of scrapie-affected sheep and healthy controls were investigated for the presence of the pathological prion protein (PrPSc). PrPs' was detected in major (parotid and mandibular) and minor (buccal, labial, and palatine) salivary glands of naturally and experimentally infected sheep. Using Western blotting, the PrPs' concentration in glands was estimated to be 0.02 to 0.005% of that in brain. Immunohistochemistry revealed intracellular depositions of PrPSc in ductal and acinar epithelia and occasional labeling in the lumina of salivary ducts. The presence of PrPSc in salivary glands highlights the possible role of saliva in the horizontal transmission of scrapie.
Notes: Times Cited: 14
G Vaccari, C D'Agostino, R Nonno, F Rosone, M Conte, M A Di Bari, B Chiappini, E Esposito, L De Grossi, F Giordani, S Marcon, L Morelli, R Borroni, U Agrimi (2007)  Prion protein alleles showing a protective effect on the susceptibility of sheep to scrapie and bovine spongiform encephalopathy   JOURNAL OF VIROLOGY 81: 25. 7306-7309 JUL  
Abstract: The susceptibility of sheep to classical scrapie and bovine spongiform encephalopathy (BSE) is mainly influenced by prion protein (PrP) polymorphisms A136V, R154H, and Q171R, with the ARR allele associated with significantly decreased susceptibility. Here we report the protective effect of the amino acid substitution M137T, I142K, or N176K on the ARQ allele in sheep experimentally challenged with either scrapie or BSE. Such observations suggest the existence of additional PrP alleles that significantly decrease the susceptibility of sheep to transmissible spongiform encephalopathies, which may have important implications for disease eradication strategies.
Notes: Times Cited: 14
2006
L Di Trani, B Bedini, I Donatelli, L Campitelli, B Chiappini, M A De Marco, M Delogu, C Buonavoglia, G Vaccari (2006)  A sensitive one-step real-time PCR for detection of avian influenza viruses using a MGB probe and an internal positive control   BMC INFECTIOUS DISEASES 6: 26. - MAY 25  
Abstract: Background: Avian influenza viruses (AIVs) are endemic in wild birds and their introduction and conversion to highly pathogenic avian influenza virus in domestic poultry is a cause of serious economic losses as well as a risk for potential transmission to humans. The ability to rapidly recognise AIVs in biological specimens is critical for limiting further spread of the disease in poultry. The advent of molecular methods such as real time polymerase chain reaction has allowed improvement of detection methods currently used in laboratories, although not all of these methods include an Internal Positive Control (IPC) to monitor for false negative results. Therefore we developed a one-step reverse transcription real time PCR (RRT-PCR) with a Minor Groove Binder (MGB) probe for the detection of different subtypes of AIVs. This technique also includes an IPC. Methods: RRT-PCR was developed using an improved TaqMan technology with a MGB probe to detect AI from reference viruses. Primers and probe were designed based on the matrix gene sequences from most animal and human A influenza virus subtypes. The specificity of RRT-PCR was assessed by detecting influenza A virus isolates belonging to subtypes from H1-H13 isolated in avian, human, swine and equine hosts. The analytical sensitivity of the RRT-PCR assay was determined using serial dilutions of in vitro transcribed matrix gene RNA. The use of a rodent RNA as an IPC in order not to reduce the efficiency of the assay was adopted. Results: The RRT-PCR assay is capable to detect all tested influenza A viruses. The detection limit of the assay was shown to be between 5 and 50 RNA copies per reaction and the standard curve demonstrated a linear range from 5 to 5 x 10(8) copies as well as excellent reproducibility. The analytical sensitivity of the assay is 10 - 100 times higher than conventional RT-PCR. Conclusion: The high sensitivity, rapidity, reproducibility and specificity of the AIV RRT-PCR with the use of IPC to monitor for false negative results can make this method suitable for diagnosis and for the evaluation of viral load in field specimens.
Notes: Times Cited: 25
G Vaccari, M A Di Bari, L Morelli, R Nonno, B Chiappini, G Antonucci, S Marcon, E Esposito, P Fazzi, N Palazzini, P Troiano, A Petrella, G Di Guardo, U Agrimi (2006)  Identification of an allelic variant of the goat PrP gene associated with resistance to scrapie   JOURNAL OF GENERAL VIROLOGY 87: 35. 1395-1402 MAY  
Abstract: The association between PrP gene variations and scrapie susceptibility was studied in a single herd of lonica breed goats. The entire herd comprised 100 animals, 11 of which were clinically affected and showed pathological prion protein (PrPSc) deposition in both their central nervous system (CNS) and lymphoreticular system (LRS). Among asymptomatic goats, nine harboured PrPSc in both CNS and LRS, 19 showed PrPSc only at the LRS level and 61 animals had no PrPSc deposition. Genetic analysis of the PrP gene coding sequence revealed the presence of several polymorphisms, namely G37V, T110P, H143R, R154H, Q222K and P240S. Silent polymorphisms were also found at codons 42, 138, 219 and 232. The effect of PrP polymorphism on scrapie susceptibility was assessed by comparing the genotype distribution at each locus among animals with different pathogenetic and clinical disease stages. Significant differences in the distribution of genotypes were observed for codons 154 and 222, with polymorphism at codon 154 modulating susceptibility to scrapie and lysine at codon 222 being associated with scrapie resistance. The allelic variant encoding lysine at position 222 could be a valuable candidate to select in goats.
Notes: Times Cited: 25
R Nonno, M A Di Bari, F Cardone, G Vaccari, P Fazzi, G Dell'Omo, C Cartoni, L Ingrosso, A Boyle, R Galeno, M Sbriccoli, H P Lipp, M Bruce, M Pocchiari, U Agrimi (2006)  Efficient transmission and characterization of Creutzfeldt-Jakob disease strains in bank voles   PLOS PATHOGENS 2: 50. 112-120 FEB  
Abstract: Transmission of prions between species is limited by the "species barrier," which hampers a full characterization of human prion strains in the mouse model. We report that the efficiency of primary transmission of prions from Creutzfeldt-Jakob disease patients to a wild rodent species, the bank vole (Clethrionomys glareolus), is comparable to that reported in transgenic mice carrying human prion protein, in spite of a low prion protein-sequence homology between man and vole. Voles infected with sporadic and genetic Creutzfeldt-Jakob disease isolates show strain-specific patterns of spongiform degeneration and pathological prion protein-deposition, and accumulate protease-resistant prion protein with biochemical properties similar to the human counterpart. Adaptation of genetic Creutzfeldt-Jakob disease isolates to voles shows little or no evidence of a transmission barrier, in contrast to the striking barriers observed during transmission of mouse, hamster, and sheep prions to voles. Our results imply that in voles there is no clear relationship between the degree of homology of the prion protein of the donor and recipient species and susceptibility, consistent with the view that the prion strain gives a major contribution to the species barrier. The vole is therefore a valuable model to study human prion diversity and, being susceptible to a range of animal prions, represents a unique tool for comparing isolates from different species.
Notes: Times Cited: 28
2005
C Cartoni, M E Schinina, B Maras, R Nonno, G Vaccari, M A Di Bari, M Conte, Q G Liu, M Lu, F Cardone, O Windl, M Pocchiari, U Agrimi (2005)  Identification of the pathological prion protein allotypes in scrapie-infected heterozygous bank voles (Clethrionomys glareolus) by high-performance liquid chromatography-mass spectrometry   JOURNAL OF CHROMATOGRAPHY A 1081: 19. 122-126 JUL 15  
Abstract: Cerebral formation of the pathological isoform of the prion protein (PrP) is a crucial molecular event in prion diseases. The bank vole (Clethrionomys glareolus) is a rodent species highly susceptible to natural scrapie. The PrP gene of bank vole is polymorphic (Met/IIe) at codon 109. Here we show that homozygous 109(Met/Met) voles have incubation times shorter than heterozygous 109(Met/IIe) voles after experimental challenge with three different scrapie isolates. An HPLC-MS/MS method was optimized and applied to investigate whether in heterozygous animals both PrP allotypes are able to undergo pathological conversion. The results demonstrate that both allotypes of the prion protein participate to pathological deposition. (c) 2005 Elsevier B.V. All rights reserved.
Notes: Times Cited: 13
M Vascellari, G M Aufiero, R Nonno, U Agrimi, G Vaccari, L Basilicata, C Falcaro, M Mancin, S Marcon, F Mutinelli (2005)  Diagnosis and PrP genotype target of scrapie in clinically healthy sheep of Massese breed in the framework of a scrapie eradication programme   ARCHIVES OF VIROLOGY 150: 52. 1959-1976 OCT  
Abstract: The application of a selective culling programme in two scrapie affected flocks of Massese breed sheep is described. The genetic susceptibility of this breed and the sensitivity of different diagnostic methods in the pre-clinical diagnosis of scrapie were also investigated. Overall, 2,068 clinically healthy sheep underwent PrP genotyping, providing the basis for selective culling. The prevalence of scrapie infection was investigated in susceptible sheep by two independent diagnostic methods. All the sheep older than 18 months (n = 620) were tested by Prionics(R) Check Western rapid test on the obex, with a prevalence of infection of 3.9%. Furthermore, 385 sheep underwent immunohistochemistry (IHC) on retropharyngeal lymph node (RPLN), with a prevalence of infection of 5.2%. Overall, 32 sheep were diagnosed with pre-clinical scrapie. Of these, 31 were positive by Western blot on the spleen, 29 by IHC on the RPLN and tonsil, 28 by IHC on the obex, 24 by rapid test, and only 18 by IHC on the third eyelid. All the scrapie positive sheep were of the ARQ/ARQ, ARQ/AHQ or ARQ/VRQ genotypes. No significant differences in scrapie prevalence were observed among these genotypes. The estimated risk of the three targeted alleles was also similar, suggesting that in this breed the VRQ allele was not at higher risk for scrapie, compared to the ARQ and AHQ alleles.
Notes: Times Cited: 7
B Chiappini, G Brambilla, U Agrimi, G Vaccari, H J M Aarts, G Berben, D Frezza, V Giambra (2005)  Real-time polymerase chain reaction approach for quantitation of ruminant-specific DNA to indicate a correlation between DNA amount and meat and bone meal heat treatments   JOURNAL OF AOAC INTERNATIONAL 88: 28. 1399-1403 SEP  
Abstract: The use of ruminant-derived proteins in ruminant feeds has been banned in both the European Union and the United States to prevent further spread of bovine spongiform encephalopathy. Enforcement of these regulations relies on the ability to identify the presence of prohibited proteins in feed. We developed a quantitative real-time polymerase chain reaction assay for the quantification of ruminant-specific DNA as index of protein content. The assay is based on the amplification of a 117 base pair mitochondrial 16S rRNA DNA gene fragment and an internal positive control (IPC). The use of an IPC permits compensation for differences in DNA extraction efficiency and avoids the occurrence of false-negative results. We demonstrated a decrease in target DNA amount with a difference of 2 logs between meat and bone meal (MBM) treated at 133 degrees and 145 degrees C. Such a difference indicates that bias could occur when DNA-based methods are used for quantitation purposes. Risk management could benefit from future efforts concerning validation of the method for MBM detection in feedstuff and safety evaluation of the use of animal-derived proteins in animal nutrition.
Notes: Times Cited: 11
C Uboldi, I Del Vecchio, M G Foti, A Azzalin, M Paulis, E Raimondi, G Vaccari, U Agrimi, G Di Guardo, S Comincini, L Ferretti (2005)  Prion-like Doppel gene (PRND) in the goat : genomic structure, cDNA, and polymorphisms   MAMMALIAN GENOME 16: 27. 963-971 DEC  
Abstract: The genomic structure of the caprine Doppel gene (PRND) was determined using the ovine sequence as a scaffold to generate PCR fragments that were aligned with a cDNA sequence obtained from testicular mRNA. The caprine gene contains two exons, 89 and > 2291 bp long, separated by a 1689-bp intron. Two mRNA isoforms of 3.2 and 4.8 kb were identified in the testis, as well as the exact transcription start site by fluorescently labeled oligonucleotide extension (FLOE). Like in sheep and cattle, the open reading frame (ORF) (537 bp) lies within exon 2 and is very much conserved in sheep (99.3%) and cattle (97%). The intronic sequence is also highly conserved (95.3%) compared with sheep, with the only exception of a 47-bp insertion. The PRND ORF was sequenced in 47 healthy and 17 TSE-affected goats of the Italian Ionica breed. Seven nucleotide positions showed variation: T28C, C65T, A151G, G286A, C385G, T451C, and T528C. Five were commonly represented polymorphisms: T28C, T451C, and T528C are silent mutations at codons L10, L151, and I176, respectively, while A151G and C385G determine a T51A and L129V amino acid change, respectively. The two remaining variants, C65T and G286A, were rare, leading to the amino acid substitutions S22F and E96K, respectively. None of the polymorphisms was significantly relatable to the TSE status, and the same result was obtained by the analysis of the combined haplotypes at the five major polymorphic sites, namely, T28C, C65T, A151G, G286A, and C385G.
Notes: Times Cited: 9
2004
G Vaccari, A Conte, L Morelli, G Di Guardo, R Petraroli, U Agrimi (2004)  Primer extension assay for prion protein genotype determination in sheep   MOLECULAR AND CELLULAR PROBES 18: 20. 33-37 FEB  
Abstract: Scrapie is a transmissible spongiform encephalopathy (TSE) which affects sheep and goats. TSEs are characterised by the conversion of the cellular prion protein (PrPC) into the pathological form PrPSc. The occurrence of scrapie in sheep is influenced by polymorphisms in the PrP gene; in particular, three codons (136, 154 and 171) are important in conditioning the susceptibility/resistance of sheep to the disease, with the Val/Val(136) Arg/Arg(154) Gln/Gln(171) genotype being the most susceptible and the Ala/Ala(136) Arg/Arg(154) Arg/Arg(171), the most resistant one. The latter genotype seems to confer, in sheep, resistance to the oral infection with bovine spongiform encephalopathy, as well. The selection of genetically resistant sheep populations represents the basis of the recent strategies against ovine TSE in the European Union (EU). Herein, we describe a rapid and simple method, based on the primer extension technique, for PrP genotype determination at codons 136, 154 and 171. Intra-laboratory validation of the method showed accuracy levels comparable to those of sequencing analysis. Such method could be used for both the application of the EU policies requiring PrP genotype analysis in all ovine TSE cases, and the large-scale genotyping claimed by the implementation of breeding programmes for genetic resistance to TSE in sheep. (C) 2003 Elsevier Ltd. All rights reserved.
Notes: Times Cited: 9
2003
D Frezza, M Favaro, G Vaccari, C von-Holst, V Giambra, E Anklam, D Bove, P A Battaglia, U Agrimi, G Brambilla, P Ajmone-Marsan, M Tartaglia (2003)  A competitive polymerase chain reaction-based approach for the identification and semiquantification of mitochondrial DNA in differently heat-treated bovine meat and bone meal   JOURNAL OF FOOD PROTECTION 66: 31. 103-109 JAN  
Abstract: The risk of bovine spongiform encephalopathy propagation was drastically reduced after the European Union (EU) Health Authorities adopted restrictions involving a ban on animal-derived proteins in the diet of farm animals. Currently, the EU's officially recommended method for controlling meat and bone meal (MBM) in animal feed is the microscopic method, which involves the identification of bone fragments on the basis of their morphological characteristics. Recently, we demonstrated that a polymerase chain reaction (PCR)-based assay can be used for the detection of taxon-specific DNA in MBM and animal feeds. To ensure the safe rendering of animal by-products, the EU Council requires that this material be treated at 133degreesC at 300 kPa for 20 min. Here we investigate the relationship between DNA degradation, PCR amplification, and MBM heat treatment. With a competitive PCR-based approach, we compare the amplification efficiency of bovine mitochondrial DNA target sequences of different lengths in several heat-treated MBM samples. For our method, a synthetic competitive DNA is used as an internal control for both DNA extraction and PCR reaction. A correlation between an increase in treatment temperature and a reduction in the size of the target sequences suitable for amplification was observed, suggesting progressive DNA fragmentation due to the temperature. We show that short amplicons (147 bp) can be used to detect the presence of bovine mtDNA in MBM samples treated according to the current European regulations. The use of such a competitive approach to compare amplification efficiency levels of targets of different lengths might represent a useful tool for the determination of both the amount of MBM in animal feeds and its proper heat treatment.
Notes: Times Cited: 38
U Agrimi, M Conte, L Morelli, M A Di Bari, G Di Guardo, C Ligios, G Antonucci, G M Aufiero, N Pozzato, F Mutinelli, R Nonno, G Vaccari (2003)  Animal transmissible spongiform encephalopathies and genetics   VETERINARY RESEARCH COMMUNICATIONS 27: 31. 31-38 SEP  
Abstract: The genotype of the host plays a crucial role in the pathogenesis of transmissible spongiform encephalopathies (TSEs). In this respect, the most important factor is represented by the gene of the prion protein (PrP). The present work summarizes the currently available knowledge on the genetic basis of TSEs focusing, in particular, on sheep scrapie. Interest in this disease has grown markedly following the discovery of bovine spongiform encephalopathy, both for scientific and health reasons. In Italy, specific research grants from the Ministry of Health and the National Research Council (CNR), together with cooperation between the Istituto Superiore di Sanit and the Istituti Zooprofilattici Sperimentali, have allowed us to study the PrP genotype and to investigate the genetic susceptibility to scrapie in the most important Italian sheep breeds, with special reference to Sarda, Comisana and Massese. The PrP genotype in relation to scrapie susceptibility was also studied in goats of lonica breed.
Notes: Times Cited: 26
R Nonno, E Esposito, G Vaccari, M Conte, S Marcon, M Di Bari, C Ligios, G Di Guardo, U Agrimi (2003)  Molecular analysis of cases of Italian sheep scrapie and comparison with cases of bovine spongiform encephalopathy (BSE) and experimental BSE in sheep   JOURNAL OF CLINICAL MICROBIOLOGY 41: 39. 4127-4133 SEP  
Abstract: Concerns have been raised about the possibility that the bovine spongiform encephalopathy (BSE) agent could have been transmitted to sheep populations via contaminated feedstuffs. The objective of our study was to investigate the suitability of molecular strain typing methods as a surveillance tool for studying scrapie strain variations and for differentiating PrPSc from sheep scrapie, BSE, and sheep BSE. We studied 38 Italian sheep scrapie cases from 13 outbreaks, along with a British scrapie case, an experimental ovine BSE, and 3 BSE cases, by analyzing the glycoform patterns and the apparent molecular masses of the nonglycosylated forms of semipurified, proteinase-treated PrPSc. Both criteria were able to clearly differentiate sheep scrapie from BSE and ovine experimental BSE. PrPSc from BSE and sheep BSE showed a higher glycoform ratio and a lower molecular mass of the nonglycosylated form compared to scrapie PrPSc. Scrapie cases displayed homogeneous PrPSc features regardless of breed, Hock, and geographic origin. The glycoform patterns observed varied with the antibody used, but either a monoclonal antibody (MAb) (F99/97.6.1) or a polyclonal antibody (P7-7) was able to distinguish scrapie from BSE PrPSc. While more extensive surveys are needed to further corroborate these findings, our results suggest that large-scale molecular screening of sheep populations for BSE surveillance may be eventually possible.
Notes: Times Cited: 30
2001
S Comincini, M G Foti, M A Tranulis, D Hills, G Di Guardo, G Vaccari, J L Williams, I Harbitz, L Ferretti (2001)  Genomic organization, comparative analysis, and genetic polymorphisms of the bovine and ovine prion Doppel genes (PRND)   MAMMALIAN GENOME 12: 18. 729-733 SEP  
Abstract: The doppel protein (Dpl) is a prion-like protein encoded by the gene PRND, which has been found downstream of the prion gene, PRNP, in human and mouse. This paper describes the isolation and structural organization of the bovine and ovine PRND genes, which are composed of two exons compared with the three of human and mouse. Intergenic distances between PRNP and PRND were covered by means of long-range PCR and found to be 16.8 and 20 kb, in cattle and sheep respectively. The 5' and 3' untranslated regions (UTR) were analyzed to identify transcription regulatory sequences and compared with those from the PRND and PRNP sequences published for other species. Three polymorphisms (R50H, N110H, and R132Q) were revealed in the cattle coding region; two synonymous substitutions (I12I, A26A) were found in sheep. None of the polymorphisms was significantly associated with either Bovine Spongiform. Encephalopathy (BSE) in cattle or scrapie in sheep.
Notes: Times Cited: 32
G Vaccari, R Petraroli, U Agrimi, C Eleni, M G Perfetti, M A Di Bari, L Morelli, C Ligios, L Busani, R Nonno, G Di Guardo (2001)  PrP genotype in Sarda breed sheep and its relevance to scrapie   ARCHIVES OF VIROLOGY 146: 24. 2029-2037  
Abstract: Several PrP gene polymorphisms modulate sheep scrapie susceptibility. Recently, an increase of scrapie outbreaks has been reported in Italy. A vaccine containing sheep brain homogenate was used in most of the outbreaks. We investigated PrP gene polymorphisms in scrapie-affected and clinically healthy Sarda breed sheep from a flock exposed to the aforementioned vaccine, and in affected Sarda sheep from unexposed flocks. All affected animals were (Gln/Gln)(171) homozygous. Moreover, we observed no variation for Ala(136) and a new polymorphism (Lys to Asn) at codon 176. Our findings confirm the correlation between scrapie and (Gln/Gln)(171) in breeds with no variation for Ala(136).
Notes: Times Cited: 35
2000
R Petraroli, G Vaccari, M Pocchiari (2000)  A rapid and efficient method for the detection of point mutations of the human prion protein gene (PRNP) by direct sequencing   JOURNAL OF NEUROSCIENCE METHODS 99: 21. 59-63 JUN 30  
Abstract: Creutzfeldt-Jakob disease (CJD) and related disorders occur in sporadic, acquired and inherited forms. In sporadic, iatrogenic and new variant CJD the polymorphic codon 129 of the prion protein gene (PRNP) plays an important role for the susceptibility to the disease and for the clinical and neuropathological manifestations. All the inherited forms of CJD and related disorders are linked to point or insert mutations of PRNP. The analysis of PRNP is therefore important for a correct classification of these disorders and for the identification of novel mutations. The aim of the present study is to describe a fast and easy to perform method for the direct sequencing of the PCR amplified PRNP open reading frame, by using M13 tailed primers which allow a direct and rapid method of sequencing. The goodness of this method is demonstrated in the analysis of three sporadic CJD patients with different genotypes at codon 129 and three inherited cases bearing different point mutations of PRNP: the Pro102Leu mutation linked to Gerstmann - Straussler - Scheinker-syndrome, the Val210Ile mutation and a novel mutation at codon 211 (Gln211Glu) both associated to familial CJD. (C) 2000 Elsevier Science B.V. All rights reserved.
Notes: Times Cited: 11
1998
V Giandomenico, G Vaccari, G Fiorucci, Z Percario, S Vannucchi, P Matarrese, W Malorni, G Romeo, E Affabris (1998)  Apoptosis and growth inhibition of squamous carcinoma cells treated with interferon-alpha, interferon-beta and retinoic acid are associated with induction of the cyclin-dependent kinase inhibitor p21   EUROPEAN CYTOKINE NETWORK 9: 55. 619-631 DEC  
Abstract: Recent studies have revealed promising leads on the potential of interferons (IFNs) in combination with retinoids in solid tumor therapy. The role of IFN-alpha and retinoic acid (RA) in cervical cancer is currently under active study. Because preclinical and clinical data on IFN-beta in combination with retinoids show promising results against breast carcinoma, we analysed the anti-proliferative effect of human recombinant IFN-beta alone or in combination with all-trans RA on two human squamous cervical carcinoma cell (SCC) lines (ME180 and SiHa). The two cell lines differ in their sensitivity to the anti-proliferative effects of the different agents and their combination: i) both cell lines were more responsive to IFN-beta than to IFN-alpha 2b; ii) combined treatment with RA increases the growth inhibitory effect of the single agents in ME180, but not in SiHa; iii) the antiproliferative effect correlates with the induction of apoptosis. We suggest as a possible mechanisms of action that interferon regulatory factor-1 (IRF-1), a transcription factor which belongs to the IFN machinery, and the cyclin-dependent kinase inhibitor (CDKi) p21 can be involved in cellular growth inhibition and in the induction of apoptosis. These results support the use of IFN-beta in further clinical investigation possibly in combination with retinoids.
Notes: Times Cited: 33
Powered by PublicationsList.org.