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Guillaume Blin

gblin@univ-mlv.fr


Journal articles

2008	Guillaume Blin, Guillaume Fertin, Danny Hermelin, Stéphane Vialette (2008) Fixed-Parameter Algorithms For Protein Similarity Search Under mRNA Structure Constraints Journal of Discrete Algorithms Abstract: Notes: To appear
	Guillaume Blin, Alain Denise, Serge Dulucq, Claire Herrbach, Hélène Touzet (2008) Alignment of RNA structures IEEE/ACM Transactions on Computational Biology and Bioinformatics Abstract: Notes: To appear
2007	Guillaume Blin, Eric Blais, Danny Hermelin, Pierre Guillon, Mathieu Blanchette, Nadia El-Mabrouk (2007) Gene Maps Linearization using Genomic Rearrangement Distances Journal of Computational Biology 14: 4. 394-407 Abstract: Notes:
	Guillaume Blin, Guillaume Fertin, Stéphane Vialette (2007) Extracting Constrained $2$-Interval Subsets in $2$-Interval Sets Theoretical Computer Science 385: 1-3. 241-263 Abstract: Notes:
	Guillaume Blin, Cedric Chauve, Guillaume Fertin, Roméo Rizzi, Stéphane Vialette (2007) Comparing genomes with duplications : a computational complexity point of view IEEE/ACM Transactions on Computational Biology and Bioinformatics 4: 4. 523-534 oct Abstract: Notes:
2005	Guillaume Blin, Guillaume Fertin, Roméo Rizzi, Stéphane Vialette (2005) What Makes the Arc-Preserving Subsequence Problem Hard? Transactions on Computational Systems Biology II 3680: 1-36 Abstract: Notes:
Conference papers

2007	Guillaume Blin, Guillaume Fertin, Irena Rusu, Christine Sinoquet (2007) Extending the Hardness of RNA Secondary Structure Comparison In: 1st intErnational Symposium on Combinatorics, Algorithms, Probabilistic and Experimental methodologies (ESCAPE’07) Edited by:Bo Chen, Mike Paterson, Guochuan Zhang. 140-151 Hangzhou, China: Springer-Verlag Abstract: Notes:
	Guillaume Blin, Guillaume Fertin, Gaël Herry, Stéphane Vialette (2007) Comparing RNA structures : towards an intermediate model between the EDIT and the LAPCS problems In: 1st Brazilian Symposium on Bioinformatics (BSB’07) Edited by:Marie-France Sagot, Maria Emilia Telles Walter. 101-112 Angra dos Reis, Brazil: Springer-Verlag Abstract: Notes:
2006	Guillaume Blin, Eric Blais, Pierre Guillon, Mathieu Blanchette, Nadia El-Mabrouk (2006) Inferring Gene Orders from Gene Maps using the Breakpoint Distance In: 4th Annual RECOMB Satellite Workshop on Comparative Genomics (RECOMB-CG’06) Edited by:Guillaume Bourque, Nadia El-Mabrouk. 99-112 Montréal, Quebec: Springer-Verlag Abstract: Notes:
	Guillaume Blin, Hélène Touzet (2006) How to Compare Arc-Annotated Sequences : The Alignment Hierarchy In: 13th String Processing and Information Retrieval (SPIRE’06) Edited by:Fabio Crestani, Paolo Ferragina, Mark Sanderson. 291-303 Glasgow, UK: Springer-Verlag Abstract: Notes:
	Guillaume Blin, Annie Chateau, Cedric Chauve, Yannick Gingras (2006) Inferring Positional Homologs with Common Intervals of Sequences In: 4th Annual RECOMB Satellite Workshop on Comparative Genomics (RECOMB-CG’06) Edited by:Guillaume Bourque, Nadia El-Mabrouk. 24-38 Montreal,Quebec: Springer-Verlag Abstract: Notes:

2005	Guillaume Blin, Cedric Chauve, Guillaume Fertin (2005) Genes Order and Phylogenetic Reconstruction : Application to γ-Proteobacteria In: 3rd Annual RECOMB Satellite Workshop on Comparative Genomics (RECOMB-CG’05) Edited by:Aoife McLysaght, Daniel H. Huson. 11-20 Dublin, Ireland: Springer-Verlag Abstract: Notes:
	Guillaume Blin, Guillaume Fertin, Danny Hermelin, Stéphane Vialette (2005) Fixed-Parameter Algorithms for Protein Similarity Search In: 31st International Workshop on Graph-Theoretic Concepts in Computer Science (WG’05) Edited by:Dieter Kratsch. 271-282 Metz, France: Springer-Verlag Abstract: Notes:
	Guillaume Blin, Roméo Rizzi (2005) Conserved Interval Distance Computation Between Non-trivial In: 11th Annual International Conference Computing and Combinatorics (COCOON’05) Edited by:Lusheng Wang. 22-31 Kunming, China: Springer-Verlag Abstract: Notes:
	Guillaume Blin, Guillaume Fertin, Roméo Rizzi, Stéphane Vialette (2005) What Makes the Arc-Preserving Subsequence Problem Hard? In: 5th Int. Workshop on Bioinformatics Research and Applications (IWBRA’05) Edited by:Vaidy S. Sunderam, G Dick van Albada, Peter M. A. Sloot, Jack Dongarra. 860-868 Atlanta, GA, USA: Springer-Verlag Abstract: Notes:
2004	Guillaume Blin, Guillaume Fertin, Roméo Rizzi, Stéphane Vialette (2004) Pattern Matching in Arc-Annotated Sequences : New Results for the APS Problem In: 5th Journ\'ees Ouvertes de Biologie, Informatique et Math\'ematiques (JOBIM’04) Montréal, Quebec: IEEE Computer Society Abstract: Notes:
	Guillaume Blin, Guillaume Fertin, Stéphane Vialette (2004) New Results for the 2-Interval Pattern Problem In: 15th Symposium on Combinatorial Pattern Matching (CPM’04) Edited by:Suleyman Cenk Sahinalp, S Muthukrishnan, Ugur Dogrusoz. 311-322 Istanbul, Turkey: Springer-Verlag Abstract: Notes:
	Guillaume Blin, Guillaume Fertin, Cedric Chauve (2004) The breakpoint distance for signed sequences In: 1st Conference on Algorithms and Computational Methods for biochemical and Evolutionary Networks (CompBioNets’04) 3-16 Recife, Brazil: King's College London publications Abstract: Notes:
PhD theses

2005	Guillaume Blin (2005) Combinatoire and Bio-informatique : Comparaison de structures d’ARN et calcul de distances intergénomiques Université de Nantes Montréal, Quebec: Abstract: Notes:
Other

2003	Guillaume Blin, Guillaume Fertin, Irena Rusu, Christine Sinoquet (2003) RNA Sequences and the EDIT(NESTED,NESTED) problem Abstract: Notes:

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