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Johan van Groenestijn


johan.vangroenestijn@tno.nl

Journal articles

2010
Karl Rumbold, Hugo Jj van Buijsen, Vincent M Gray, Johan W van Groenestijn, Karin M Overkamp, Ronald S Slomp, Mariët J van der Werf, Peter J Punt (2010)  Microbial renewable feedstock utilization: A substrate-oriented approach.   Bioeng Bugs 1: 5. 359-366 09  
Abstract: Increasingly lignocellulosic biomass hydrolysates are used as the feedstock for industrial fermentations. These biomass hydrolysates consist of complex mixtures of different fermentable sugars, but also contain inhibitors and salts that affect the performance of the product-generating microbes. The performance of six industrially relevant microorganisms, i.e., two bacteria (Escherichia coli and Corynebacterium glutamicum), two yeasts (Saccharomyces cerevisiae and Pichia stipitis) and two fungi (Aspergillus niger and Trichoderma reesei) were compared for their ability to utilize and grow on different feedstock hydrolysates (corn stover, wheat straw, sugar cane bagasse and willow wood). Moreover, the ability of the selected hosts to utilize waste glycerol from the biodiesel industry was evaluated. P. stipitis and A. niger were found to be the most versatile and C. glutamicum, and S. cerevisiae were shown to be the least adapted to renewable feedstocks. Clear differences in the utilization of the more abundant carbon sources in these feedstocks were observed between the different species. Moreover, in a species-specific way the production of various metabolites, in particular polyols, alcohols and organic acids was observed during fermentation. Based on the results obtained we conclude that a substrate-oriented instead of the more commonly used product oriented approach towards the selection of a microbial production host will avoid the requirement for extensive metabolic engineering. Instead of introducing multiple substrate utilization and detoxification routes to efficiently utilize lignocellulosic hydrolysates only one biosynthesis route forming the product of interest has to be engineered.
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2009
J W van Groenestijn, J S Geelhoed, H P Goorissen, K P M Meesters, A J M Stams, P A M Claassen (2009)  Performance and population analysis of a non-sterile trickle bed reactor inoculated with Caldicellulosiruptor saccharolyticus, a thermophilic hydrogen producer.   Biotechnol Bioeng 102: 5. 1361-1367 Apr  
Abstract: Non-axenic operation of a 400 L trickle bed reactor inoculated with the thermophile Caldicellulosiruptor saccharolyticus, yielded 2.8 mol H2/mol hexose converted. The reactor was fed with a complex medium with sucrose as the main substrate, continuously flushed with nitrogen gas, and operated at 73 degrees C. The volumetric productivity was 22 mmol H2/(L filterbed h). Acetic acid and lactic acid were the main by-products in the liquid phase. Production of lactic acid occurred when hydrogen partial pressure was elevated above 2% and during suboptimal fermentation conditions that also resulted in the presence of mono- and disaccharides in the effluent. Methane production was negligible. The microbial community was analyzed at two different time points during operation. Initially, other species related to members of the genera Thermoanaerobacterium and Caldicellulosiruptor were present in the reactor. However, these were out-competed by C. saccharolyticus during a period when sucrose was completely used and no saccharides were discharged with the effluent. In general, the use of pure cultures in non-sterile industrial applications is known to be less useful because of contamination. However, our results show that the applied fermentation conditions resulted in a culture of a single dominant organism with excellent hydrogen production characteristics.
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Karl Rumbold, Hugo J J van Buijsen, Karin M Overkamp, Johan W van Groenestijn, Peter J Punt, Mariët J van der Werf (2009)  Microbial production host selection for converting second-generation feedstocks into bioproducts.   Microb Cell Fact 8: 12  
Abstract: Increasingly lignocellulosic biomass hydrolysates are used as the feedstock for industrial fermentations. These biomass hydrolysates are complex mixtures of different fermentable sugars, but also inhibitors and salts that affect the performance of the microbial production host. The performance of six industrially relevant microorganisms, i.e. two bacteria (Escherichia coli and Corynebacterium glutamicum), two yeasts (Saccharomyces cerevisiae and Pichia stipitis) and two fungi (Aspergillus niger and Trichoderma reesei) were compared for their (i) ability to utilize monosaccharides present in lignocellulosic hydrolysates, (ii) resistance against inhibitors present in lignocellulosic hydrolysates, (iii) their ability to utilize and grow on different feedstock hydrolysates (corn stover, wheat straw, sugar cane bagasse and willow wood). The feedstock hydrolysates were generated in two manners: (i) thermal pretreatment under mild acid conditions followed by enzymatic hydrolysis and (ii) a non-enzymatic method in which the lignocellulosic biomass is pretreated and hydrolyzed by concentrated sulfuric acid. Moreover, the ability of the selected hosts to utilize waste glycerol from the biodiesel industry was evaluated.
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2008
Frances X Prenafeta-Boldú, Josep Illa, Johan W van Groenestijn, Xavier Flotats (2008)  Influence of synthetic packing materials on the gas dispersion and biodegradation kinetics in fungal air biofilters.   Appl Microbiol Biotechnol 79: 2. 319-327 May  
Abstract: The biodegradation of toluene was studied in two lab-scale air biofilters operated in parallel, packed respectively with perlite granules (PEG) and polyurethane foam cubes (PUC) and inoculated with the same toluene-degrading fungus. Differences on the material pore size, from micrometres in PEG to millimetres in PUC, were responsible for distinct biomass growth patterns. A compact biofilm was formed around PEG, being the interstitial spaces progressively filled with biomass. Microbial growth concentrated at the core of PUC and the excess of biomass was washed-off, remaining the gas pressure drop comparatively low. Air dispersion in the bed was characterised by tracer studies and modelled as a series of completely stirred tanks (CSTR). The obtained number of CSTR (n) in the PEG packing increased from 33 to 86 along with the applied gas flow (equivalent to empty bed retention times from 48 to 12 s) and with operation time (up to 6 months). In the PUC bed, n varied between 9 and 13, indicating that a stronger and steadier gas dispersion was achieved. Michaelis-Menten half saturation constant (km) estimates ranged 71-113 mg m(-3), depending on the experimental conditions, but such differences were not significant at a 95% confidence interval. The maximum volumetric elimination rate (rm) varied from 23 to 50 g m(-3) h(-1). Comparison between volumetric and biomass specific biodegradation activities indicated that toluene mass transfer was slower with PEG than with PUC as a consequence of a smaller biofilm surface and to the presence of larger zones of stagnant air.
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2005
Ai-jie Wang, Da-zhong Du, Nan-qi Ren, Johan W van Groenestijn (2005)  An innovative process of simultaneous desulfurization and denitrification by Thiobacillus denitrificans.   J Environ Sci Health A Tox Hazard Subst Environ Eng 40: 10. 1939-1949  
Abstract: Thiobacillus denitrificans, a species of autotrophic facultative anaerobic bacterium, was found to be capable of oxidizing sulfide into elemental sulfur when nitrate was adopted as its electron acceptor and carbon dioxide as its sole carbon source under anoxic conditions. In this way, sulfur was accumulated extracellularly and nitrate was converted into nitrogen gas. Based on these special physiological characteristics, an innovative process of simultaneous desulfurization and denitrification (SDD) was developed to obtain sulfur from sulfide. A strain of T. denitrificans, named D(4), was isolated and used as sulfur producers in this study. The stoichiometric equations of SDD by T. denitrificans were also derived. The key factors affecting this process were investigated through continuous-flow and batch tests. The experimental results indicated that both the sulfide concentration and the ratio of S2-/NO3- in the influent are key factors. Their suitable levels are suggested to be controlled less than 300 mg/L and 5/3-5/2, respectively, to achieve a high sulfur conversion degree.
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2003
K P H Meesters, J W Van Groenestijn, J Gerritse (2003)  Biofouling reduction in recirculating cooling systems through biofiltration of process water.   Water Res 37: 3. 525-532 Feb  
Abstract: Biofouling is a serious problem in industrial recirculating cooling systems. It damages equipment, through biocorrosion, and causes clogging and increased energy consumption, through decreased heat transfer. In this research a fixed-bed biofilter was developed which removed assimilable organic carbon (AOC) from process water, thus limiting the major substrate for the growth of biofouling. The biofilter was tested in a laboratory model recirculating cooling water system, including a heat exchanger and a cooling tower. A second identical model system without a biofilter served as a reference. Both installations were challenged with organic carbon (sucrose and yeast extract) to provoke biofouling. The biofilter improved the quality of the recirculating cooling water by reducing the AOC content, the ATP concentration, bacterial numbers (30-40 fold) and the turbidity (OD660). The process of biofouling in the heat exchangers, the process water pipelines and the cooling towers, was monitored by protein increase, heat transfer resistance, and chlorine demanded for maintenance. This revealed that biofouling was lower in the system with the biofilter compared to the reference installation. It was concluded that AOC removal through biofiltration provides an attractive, environmental-friendly means to reduce biofouling in industrial cooling systems.
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Jun-Xin Liu, J W van Groenestijn (2003)  Optimum operation conditions of nitrogen and phosphorus removal by a biofilm-activated-sludge system.   J Environ Sci (China) 15: 1. 25-30 Jan  
Abstract: In the biofilm and activated sludge combined system, denitrifying bacteria attached on the fibrous carriers in the anoxic tank, while the sludge containing nitrifying and phosphorus removal bacteria was only recirculated between the aerobic and anaerobic tanks. Therefore, the factors affected and restricted nitrification, denitrification and phosphorus removal in a traditional A/A/O process were resolved. This paper describes the optimum operation conditions for nitrogen and phosphorus removal using this system.
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2002
F X Prenafeta-Boldú, J Vervoort, J T C Grotenhuis, J W Van Groenestijn (2002)  Substrate interactions during the biodegradation of benzene, toluene, ethylbenzene, and xylene (BTEX) hydrocarbons by the fungus Cladophialophora sp. strain T1.   Appl Environ Microbiol 68: 6. 2660-2665 Jun  
Abstract: The soil fungus Cladophialophora sp. strain T1 (= ATCC MYA-2335) was capable of growth on a model water-soluble fraction of gasoline that contained all six BTEX components (benzene, toluene, ethylbenzene, and the xylene isomers). Benzene was not metabolized, but the alkylated benzenes (toluene, ethylbenzene, and xylenes) were degraded by a combination of assimilation and cometabolism. Toluene and ethylbenzene were used as sources of carbon and energy, whereas the xylenes were cometabolized to different extents. o-Xylene and m-xylene were converted to phthalates as end metabolites; p-xylene was not degraded in complex BTEX mixtures but, in combination with toluene, appeared to be mineralized. The metabolic profiles and the inhibitory nature of the substrate interactions indicated that toluene, ethylbenzene, and xylene were degraded at the side chain by the same monooxygenase enzyme. Our findings suggest that soil fungi could contribute significantly to bioremediation of BTEX pollution.
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J R Woertz, W N M van Heiningen, M H A van Eekert, N J R Kraakman, K A Kinney, J W van Groenestijn (2002)  Dynamic bioreactor operation: Effects of packing material and mite predation on toluene removal from off-gas.   Appl Microbiol Biotechnol 58: 5. 690-694 Apr  
Abstract: Recent studies have focused on using vapor-phase bioreactors for the treatment of volatile organic compounds from contaminated air streams. Although high removal capacities have been achieved in many studies, long-term operation is often unstable at high pollutant loadings due to biomass accumulation and drying of the packing medium. In this study, three bench-scale bioreactors were operated to determine the effect of packing material and fungal predation on toluene removal efficiency and pressure drop. Toluene elimination capacities (mass toluene removed per unit packing per unit time) above 100 g m(-3) h(-1) were obtained in the fungal bioreactors packed with light-weight, artificial medium, and submersion of the packing in mineral medium once per week was found to provide sufficient moisture and nutrients to the biofilm. The use of mites as fungal predators improved performance by increasing the overall mineralization of toluene to CO(2), and by dislodging biomass along the bioreactor.
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Jun-xin Liu, J W van Groenestijn, H J Doddema, Bao-zhen Wang (2002)  Addition of anaerobic tanks to an oxidation ditch system to enhance removal of phosphorus from wastewater.   J Environ Sci (China) 14: 2. 245-249 Apr  
Abstract: The oxidation ditch has been used for many years all over the world as an economic and efficient wastewater treatment technology. It can remove COD, nitrogen and a part of phosphorus efficiently. In the experiment described, a pilot scale Pasveer oxidation ditch system has been tested to investigate the removal of phosphorus from wastewater. The experimental results showed that influent total phosphorus(TP) was removed for 35%-50%. After this, two anaerobic tanks with total volume of 11 m3 were added to the system to release phosphorus. As a result, the TP removal efficiency increased by about 20%. At an anaerobic HRT of about 6 hours, a TP removal efficiency of 71% was achieved.
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J W van Groenestijn, J S A Langerwerf, M Lucas (2002)  Reducing environmental emissions in tanneries.   J Environ Sci Health A Tox Hazard Subst Environ Eng 37: 4. 737-743  
Abstract: Tanning, in particular chrome leather production, is still characterised by an inefficient use of raw material and the production of highly polluted wastewater and solid wastes. A part of the emissions can be prevented by introducing clean tanning technologies, the remaining emissions can be treated. Clean production technologies and waste (water) treatment technologies should have a designed complimentarity. Anaerobic wastewater treatment with recovery of sulfides, sulfur and energy (biogas) is a cornerstone in such integral clean chrome leather technology.
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J R Woertz, K A Kinney, N J R Kraakman, W N M van Heiningen, M H A van Eekert, J W van Groenestijn (2002)  Mite growth on fungus under various environmental conditions and its potential application to biofilters.   Exp Appl Acarol 27: 4. 265-276  
Abstract: The effects of relative humidity, temperature, pH and vapor-phase toluene concentration on Tyrophagus putrescentiae growth on Cladophialophora sp. were tested in controlled environmental chambers. It was observed that the mites were able to reproduce readily at relative humidities between 90% and 97% as well as on porous perlite support material pre-soaked in nutrient media of pH 2.5, 4 and 7. Also, the presence of toluene at gas-phase concentrations of 500 to 2000 mg m(-3) was found to be non-toxic to the mites. The mites, however, were unable to maintain a large population when the temperature was maintained at 14 degrees C, and overpopulation of the living space led to declines in mite population over time. Overall, it was found to be relatively simple to cultivate mites that may be used for fungal biomass control measures in biofilter applications.
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2001
J W van Groenestijn, W N van Heininge, N J Kraakm (2001)  Biofilters based on the action of fungi.   Water Sci Technol 44: 9. 227-232  
Abstract: Traditional biofilters for waste gas treatment are mainly based on the degradation activity of bacteria. The application of fungi in biofilters has several advantages: fungi are more resistant to acidification and drying out, and the aerial mycelia of fungi form a larger surface area in the gas phase than bacterial biofilms, which may facilitate the uptake of hydrophobic volatile compounds. The research described here identifies important conditions for the operation of fungal-based biofilters. Biofilters with perlite packing were operated at different pHs and relative inlet gas humidities. Toluene was used as a model pollutant. It was shown that a low pH is a prerequisite for fungal growth in biofilters. Also, the fungal biofilters were more resistant to drying out and more active than the bacterial biofilters. Fungal biofilters eliminated 80-125 g toluene/m3 filterbed/h. Several measures that could limit the clogging of fungal biofilters with fungal biomass were investigated. The introduction of mites helped to control excessive fungal growth and pressure drop. The pressure drop of a perlite/fungi/mites filter of 1 m height, loaded with 200 m3 gas/m3 filter/h stabilised around 130 Pa. Biofilters based on the action of fungi are cost-effective for the treatment of waste gases containing aromatic compounds, alkenes and other hydrophobic compounds.
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1989
J W van Groenestijn, M M Bentvelsen, M H Deinema, A J Zehnder (1989)  Polyphosphate-degrading enzymes in Acinetobacter spp. and activated sludge.   Appl Environ Microbiol 55: 1. 219-223 Jan  
Abstract: Polyphosphate-degrading enzymes were studied in Acinetobacter spp. and activated sludge. Polyphosphate: AMP phosphotransferase activity in Acinetobacter strain 210A decreased with increasing growth rates. The activity of this enzyme in cell extracts of Acinetobacter strain 210A was maximal at a pH of 8.5 and a temperature of 40 degrees C and was stimulated by (NH4)2SO4. The Km for AMP was 0.6 mM, and the Vmax was 60 nmol/min per mg of protein. Cell extracts of this strain also contained polyphosphatase, which was able to degrade native polyphosphate and synthetic magnesium polyphosphate and was strongly stimulated by 300 to 400 mM NH4Cl. A positive correlation was found between polyphosphate:AMP phosphotransferase activity, adenylate kinase activity, and phosphorus accumulation in six Acinetobacter strains. Significant activities of polyphosphate kinase were detected only in strain P, which contained no polyphosphate:AMP phosphotransferase. In samples of activated sludge from different plants, the activity of adenylate kinase correlated well with the ability of the sludge to remove phosphate biologically from wastewater.
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J W van Groenestijn, M Zuidema, J J van de Worp, M H Deinema, A J Zehnder (1989)  Influence of environmental parameters on polyphosphate accumulation in Acinetobacter sp.   Antonie Van Leeuwenhoek 55: 1. 67-82  
Abstract: The regulation of and the optimum conditions for polyphosphate accumulation in Acinetobacter sp. were determined. Acinetobacter strain 210A accumulated polyphosphate in the presence of an intra- or extracellular energy source. The accumulation of polyphosphate during endogenous respiration was stimulated by streptomycin and inhibited by KCN. The highest amount of polyphosphate was found in cells in which energy supply was not limited, namely at low growth rates under sulphur limitation, and in the stationary phase of growth when either the nitrogen or the sulphur source was depleted. The phosphorus accumulation was not affected by the pH between 6.5 and 9. There was a pronounced effect of the temperature on phosphorus accumulation but is varied from strain to strain. Acinetobacter strain 210A accumulated more phosphate at low temperatures, strain B8 showed an optimum accumulation at 27.5 degrees C, while strain P accumulated phosphorus independently of the temperature. The optimum temperature for growth of Acinetobacter strains tested ranged from 25 to 33 degrees C, and the optimum pH was between 6 and 9.
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1988
J W van Groenestijn, G J Vlekke, D M Anink, M H Deinema, A J Zehnder (1988)  Role of Cations in Accumulation and Release of Phosphate by Acinetobacter Strain 210A.   Appl Environ Microbiol 54: 12. 2894-2901 Dec  
Abstract: Cells of the strictly aerobic Acinetobacter strain 210A, containing aerobically large amounts of polyphosphate (100 mg of phosphorus per g [dry weight] of biomass), released in the absence of oxygen 1.49 mmol of P(i), 0.77 meq of Mg, 0.48 meq of K, 0.02 meq of Ca, and 0.14 meq of NH(4) per g (dry weight) of biomass. The drop in pH during this anaerobic phase was caused by the release of 1.8 protons per PO(4) molecule. Cells of Acinetobacter strain 132, which do not accumulate polyphosphate aerobically, released only 0.33 mmol of P(i) and 0.13 meq of Mg per g (dry weight) of biomass but released K in amounts comparable to those released by strain 210A. Stationary-phase cultures of Acinetobacter strain 210A, in which polyphosphate could not be detected by Neisser staining, aerobically took up phosphate simultaneously with Mg, the most important counterion in polyphosphate. In the absence of dissolved phosphate in the medium, no Mg was taken up. Cells containing polyphosphate granules were able to grow in a Mg-free medium, whereas cells without these granules were not. Mg was not essential as a counterion because it could be replaced by Ca. The presence of small amounts of K was essential for polyphosphate formation in cells of strain 210A. During continuous cultivation under K limitation, cells of Acinetobacter strain 210A contained only 14 mg of phosphorus per g (dry weight) of biomass, whereas this element was accumulated in amounts of 59 mg/g under substrate limitation and 41 mg/g under Mg limitation. For phosphate uptake in activated sludge, the presence of K seemed to be crucial.
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1984
H Slijkhuis, J W van Groenestijn, D J Kylstra (1984)  Microthrix parvicella, a filamentous bacterium from activated sludge: growth on Tween 80 as carbon and energy source.   J Gen Microbiol 130: 8. 2035-2042 Aug  
Abstract: Microthrix parvicella, cultivated in a medium with Tween 80 and Casamino acids, utilized only the oleic acid moiety of Tween 80 as carbon and energy source. The cell yield from Tween 80 was about 0.32 g dry weight of cells per g of Tween 80 consumed. As only the oleic acid moiety of Tween 80 was utilized, the cell yield from oleic acid was 1.3 g dry weight of cells per g oleic acid consumed. The amount of carbon produced as CO2 was less than 30% of the oleic acid-carbon and this low value was in agreement with the high cell yield. In batch culture M. parvicella stored large amounts of lipid material during the early growth phase. The fatty acids of the lipid globules were similar to the fatty acids supplied as carbon source. The percentage composition of the biomass changed to give C/N percentage ratios of about 15 during the early growth phase due to the high concentration of internal lipids and the low concentration of protein. The growth rate in batch culture was about 0.016 h-1 but was affected by the concentration of Casamino acids in the medium.
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