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Kunal Roy

Department of Pharmaceutical Technology,
Jadavpur University,
Kolkata 700 032, INDIA
kunalroy_in@yahoo.com
Dr. Kunal Roy ( http://sites.google.com/site/kunalroyindia/ ) is an Asociate Professor in the Department of Pharmaceutical Technology, Jadavpur University, Kolkata 700 032, India. He is an Associate Editor of the Springer Journal Molecular Diversity and a member of the Editorial Advisory Board of European Journal of Medicinal Chemistry (Elsevier). He is also a member of the Editorial Board, Journal of Enzyme Inhibition and Medicinal Chemistry (Informa). He has been a Commonwealth Academic Staff Fellow in University of Manchester (UK) during 2007-08. The field of his research interest is QSAR and Molecular Modeling. Dr. Roy has published more than 150 research papers in refereed journals
( http://sites.google.com/site/kunalroyindia/home/krlistofpublications ).

Dr. Roy has been a recipient of Bioorganic and Medicinal Chemistry Most Cited Paper 2003-2006, 2004-2007 and 2006-2009 Awards (Elsevier), Bioorganic and Medicinal Chemistry Letters Most Cited Paper 2006-2009 Award (Elsevier), AICTE Career Award (AICTE, New Delhi) etc. He is a reviewer of QSAR papers in different journals like Journal of Molecular Modeling (Springer), Journal of Chemical Information and Modeling (ACS), European Journal of Medicinal Chemistry (Elsevier), Bioorganic and Medicinal Chemistry Letters (Elsevier), Journal of Computational Chemistry (Wiley), Chemosphere (Elsevier), Molecular Informatics (Wiley), etc. Dr. Roy is also a member of the Cheminformatics and QSAR Society.

Journal articles

2012
2011
2010
(2010)  Erratum : On two novel parameters for validation of predictive QSAR models (Molecules (2009) 14 (1660-1701))   Molecules 15: 1. 604-605  
Abstract:
Notes: Export Date: 30 May 2010 Source: Scopus CODEN: MOLEF Language of Original Document: English Correspondence Address: Roy, K.; Division of Medicinal and Pharmaceutical Chemistry, Department of Pharmaceutical Technology, Jadavpur University, Kolkata 700 032, India; email: kunalroy_in@yahoo.com
(2010)  Exploring QSAR of hydroxyphenylureas as antioxidants using physicochemical and electrotopological state atom parameters   Molecular Simulation 36: 6. 484-492  
Abstract: In the present study, free radical scavenging activity of 36 substituted hydroxyphenylurea derivatives was subjected to classical quantitative structure-activity relationship (QSAR) analyses using physicochemical (hydrophobicity and molar refractivity) and electrotopological state atom parameters. For the development of the QSAR models, statistical techniques such as stepwise multiple linear regression and genetic function approximation (GFA) were used. The developed models indicate an important contribution of the phenolic hydroxyl group of hydroxyphenylureas, apart from that of the urea moiety and piperazine nucleus of the side chain, to the free radical scavenging activity. The presence of substituents at the phenyl ring influences the electron density distribution over the phenolic ring system and modulates the activity. Hydrophobicity is found to contribute positively to the free radical scavenging activity. Based on internal validation (Q<sup>2</sup>), external validation (R<sup>2</sup><sub>pred</sub>) and overall validation criteria (r<sup>2</sup><sub>m(overall)</sub>), a GFA model with spline options was found to be the best model (Q<sup>2</sup>=0.957, R<sup>2</sup><sub>pred</sub>=0.966, r<sup>2</sup><sub>m(overall)</sub>=0.914). © 2010 Taylor & Francis.
Notes: Export Date: 30 May 2010 Source: Scopus CODEN: MOSIE Language of Original Document: English Correspondence Address: Roy, K.; Department of Pharmaceutical Technology, Drug Theoretics and Cheminformatics Lab, Jadavpur University, Kolkata 700 032, India; email: kunalroy_in@yahoo.com References: Halliwell, B., Gutteridge, J.M.C., (1989) Free Radicals in Biology and Medicine, pp. 185-205. , Oxford University Press, Oxford; Marx, J.L., Oxygen free radicals linked to many diseases (1987) Science, 235, pp. 529-531; Halliwell, B., Free radicals, oxygen toxicity and ageing (1981) Age Pigment, pp. 1-19. , R.S. Sohal, ed., Elsevier/North Holland, New York; Thomas, C.E., Approach and rationale for the design of synthetic antioxidants as therapeutic agents (1997) Handbook of Synthetic Antioxidants, pp. 1-52. , L. Packer and E. Cadenas, eds., Marcel Dekker, New York; Scott, G., (1988) Antioxidants Bull. Chem. Soc. Jpn, 61, pp. 165-170; Kampkotter, A., Nkwonkam, C.G., Zurawski, R.F., Timpel, C., Chovolou, Y., Watjen, W., Kahl, R., Investigations of protective effects of the flavonoids quercetin and rutin on stress resistance in the model organism Caenorhabditis elegans (2007) Toxicology, 234 (1-2), pp. 113-123. , DOI 10.1016/j.tox.2007.02.006, PII S0300483X0700100X; Nakao, K., Shimizu, R., Kubota, H., Yasuhara, M., Hashimura, Y., Suzuki, T., Fujita, T., Ohmizu, H., Quantitative structure- activity analyses of novel hydroxyphenylurea derivatives as antioxidants (1998) Bioorg. Med. Chem., 6, pp. 849-868; Nakao, K., Kubota, H., Yasuhara, M., Saito, K., Suzuki, T., Ohmizu, H., Shimizu, R., Novel hydroxyphenylurea dual inhibitor against acyl-CoA: Cholesterol acyltransferase (ACAT) and low density lipoprotein (LDL) oxidation as antiatherosclerotic agent (2001) Bioorg. Med. Chem., 9, pp. 853-861; Youssef, K., El-Sherbeny, M., Elshafire, F., Al-Deeb, O., Farag, H., Awadalla, S., New developments in antioxidant research (2006) Novel Hydroxyphenylurea As Antioxidant and Chemopreventive Agents, pp. 61-79. , H. Panglossi, ed., Nova Science Publishers, New York; Ghose, A.K., Crippen, G.M., Atomic physicochemical parameters for three-dimensional-structure- directed quantitative structure- activity relationships. 2. Modelling dispersive and hydrophobic interactions (1987) J. Chem. Inf. Comput. Sci., 27, pp. 21-35; Hall, L.H., Mohney, B., Kier, L.B., The electrotopological state: An atom index for QSAR (1991) Quant. Struct-Act. Relat., 10, pp. 43-51; Kier, L.B., Hall, L.H., An electrotopological state index for atoms in molecules (1990) Pharm. Res., 7, pp. 801-807; Hall, L.H., Mohney, B., Kier, L.B., Comparison of electrotopological state indexes with molecular orbital parameters: Inhibition of MAO by hydrazides (1993) Quant. Struct-Act. Relat., 12, pp. 44-48; Kier, L.B., Hall, L.H., (1992) Advances in Drug Research, 22. , Academic Press, New York; Kier, L.B., Hall, L.H., (1999) Molecular Structure Description: The Electrotopological State, , Academic Press, San Diego, CA; Roy, K., De, A.U., Sengupta, C., QSAR with electrotopological state atom index: Antiadrenergic activity of N,N-dimethyl-2-bromo- 2-phenylethylamines (1999) Indian J. Chem., 38 B, pp. 942-947; Roy, K., Pal, D.K., Sengupta, C., QSAR of antineoplastics V: Exploration of receptor interaction sites of antitumor N-(7-indolyl)benzenesulfonamides targeting G1 phase using electrotopological state atom index (2001) Drug Des. Discov., 17, pp. 207-218; Roy, K., De, A.U., Sengupta, C., QSAR of human factor Xa inhibitor N 2-aroylanthranilamides using principal component factor analysis (2002) Drug Des. Discov., 18, pp. 23-31; Roy, K., Chakraborty, S., Saha, A., Exploring selectivity requirements for COX-2 vs. COX-1 binding of 3,4-diaryloxazolones using E-state index (2003) Bioorg. Med. Chem. Lett., 13, pp. 3753-3757; Roy, K., Leonard, J.T., QSAR modeling of HIV-1 reverse transcriptase inhibitor 2-amino-6-arylsulfonylbenzonitriles and congeners using molecular connectivity and E-state parameters (2004) Bioorg. Med. Chem., 12, pp. 745-754; Sengupta, C., Leonard, J.T., Roy, K., Exploring QSAR of melatonin receptor ligand benzofuran derivatives using E-state index (2004) Bioorg. Med. Chem. Lett., 14, pp. 3435-3439; Ray, S., Sengupta, C., Roy, K., QSAR modeling of antiradical and antioxidant activities of flavonoids using electrotopological state (E-State) atom parameters (2007) Cent. Eur. J. Chem., 5, pp. 1094-1113; Ray, S., Sengupta, C., Roy, K., QSAR modeling for lipid peroxidation inhibition potential of flavonoids using topological and structural parameters (2008) Cent. Eur. J. Chem., 6, pp. 267-276; Leonard, J.T., Roy, K., On selection of training and test sets for the development of predictive QSAR models (2006) QSAR Comb. Sci., 25, pp. 235-251; Darlington, R.B., (1990) Regression and Linear Models, , McGraw Hill, New York; Fan, Y.L., Shi, M., Kohn, K.W., Pommier, Y., Weinstein, J.N., Quantitative structure-antitumor activity relationships of camptothecin analogues: Cluster analysis and genetic algorithm-based studies (2001) J. Med. Chem., 44, pp. 3254-3263; Rogers, D., Hopfinger, A.J., Application of genetic function approximation to quantitative structure-activity relationships and quantitative-property relationships (1994) J. Chem. Inf. Comput. Sci., 34, pp. 854-866; Snedecor, G.W., Cochran, W.G., (1967) Statistical Methods Oxford, , IBH Publishing Co. Pvt. Ltd, New Delhi; Wold, S., Eriksson, L., Multivariate linear modeling (1995) Chemometric Methods in Molecular Design, pp. 312-317. , H. van de Waterbeemd, ed., VCH, Weinheim, Germany; Debnath, A.K., Quantitative structure-activity relationship (QSAR): A versatile tool in drug design (2001) Combinatorial Library Design and Evaluation: Principles, Software Tools, and Applications in Drug Discovery, pp. 73-129. , A.K. Ghose and V.N. Viswanadhan, eds., Marcel Dekker, New York; Roy, K., On some aspects of validation of predictive QSAR models (2007) Expert Opin. Drug Discov., 2, pp. 1567-1577; Roy, P.P., Roy, K., On some aspects of variable selection for partial least squares regression models (2008) QSAR Comb. Sci., 27, pp. 302-313; Roy, P.P., Paul, S., Mitra, I., Roy, K., On two novel parameters for validation of predictive QSAR models (2009) Molecules, 14, pp. 1660-1701; Roy, P.P., Leonard, J.T., Roy, K., Exploring the impact of the size of training sets for the development of predictive QSAR models (2008) Chemom. Intell. Lab. Syst., 90, pp. 31-42; Eriksson, L., Jaworska, J., Worth, A.P., Cronin, M.T., McDowell, R.M., Gramatica, P., Methods for reliability and uncertainty assessment and for applicability evaluations of classificationsand regression-based QSARs (2003) Environ. Health Perspect, 111, pp. 1361-1375; Deeb, O., Youssel, K.M., Hemmateenejad, B., QSAR of novel hydroxyphenylureas as antioxidant agents (2008) QSAR Comb. Sci., 27, pp. 417-424
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