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r. Caminiti


ruggero.caminiti@uniroma1.it

Journal articles

2010
Daniela Pozzi, Ruggero Caminiti, Carlotta Marianecci, Maria Carafa, Eleonora Santucci, Sofia Candeloro De Sanctis, Giulio Caracciolo (2010)  Effect of cholesterol on the formation and hydration behavior of solid-supported niosomal membranes.   Langmuir 26: 4. 2268-2273 Feb  
Abstract: The effect of cholesterol on the formation and hydration behavior of solid-supported polysorbate 20 (Tween 20)/cholesterol self-assemblies was investigated by means of in situ energy-dispersive X-ray diffraction in a wide range of relative humidity (0.4 < RH < 1). At low hydration, Tween 20 and cholesterol were found to demix, with the latter molecules forming crystallites with a pseudobilayer structure (d approximately = 34 A). Water adsorption promoted the progressive solubilization of cholesterol crystallites. When in the presence of enough cholesterol, the formation of niosomal bilayer membranes rich in Tween 20 occurred (RH approximately = 0.985). Upon further hydration, two distinct regimes associated with remarkable changes in the niosomal membrane structure were identified. In the first regime (0.985 < RH < 0.988), the swelling of the lamellar d spacing was due to the enlargement of the membrane thickness. In the second regime, the structure of Tween 20/cholesterol membranes was quite insensitive to hydration, and the thickness of the intermembrane water layer increased substantially. Remarkably, the curve of the calculated number of waters per surfactant molecule showed a distinct break at RH approximately 0.988, suggesting that the observed structural change in niosomal membranes was most likely due to the completion of the filling of the Tween 20 hydration shell. At full hydration, niosomal membranes exhibited the same lamellar d spacing of niosomes vesicles in aqueous solution. The process completely reversed upon dehydration.
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Roberto Matassa, Marilena Carbone, Ilaria Fratoddi, Ruggero Caminiti (2010)  Organometallic oligomer resolved by radial distribution function of X-ray diffraction analysis.   J Phys Chem B 114: 7. 2359-2364 Feb  
Abstract: Platinum-organic oligomers are actively studied for their large physical and functional properties such as solubility, processability, color, luminescence, and optoelectronics related to the different metal groups and auxiliary coligands around the metal coordination spheres. Previous studies on nanotechnology devices have shown that the structural organization of handled metallopolymer generates several 2D or 3D nano-objects, but only based on trans polymorph chains. Here we report the first self-assembly of powder cis-Pt-DEBP oligomers that shows great self-assembling ability to form nanoscale supramolecular architectures. As a powder is obtained that shows a poor crystalline organization of the aggregates, the energy-dispersive X-ray diffraction is the nondestructive technique of choice to obtain short-range order structural parameters of a single nano-object by radial distribution function analysis. The supramolecular architecture of 8-units-long chains reveals a self-assembling organization of 18 chains exhibiting an overall linear inverted open square structure. The ensemble of oligomer chains form a parallelepiped shape with small internal square cavities of approximately 3.2 nm diameter capable of hosting smaller molecules, which opens up to all applications where sieving and sensing is important. This structural investigation of short-range order materials has provided a substantial additional impetus to the field by opening up the area of self-assembled supramolecular materials based on metallopolymers for technological applications.
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M Carbone, F Valentini, R Caminiti, A R Petrinca, D Donia, M Divizia, G Palleschi (2010)  Are PEI-coated SWCNTs conjugated with hepatitis A virus? A chemical study with SEM, Z-potential, EDXD and RT-PCR.   Biomed Mater 5: 3. Jun  
Abstract: The conjugation between nanotubes, coated with different doses of polyethylene imine (PEI) and hepatitis A virus (HAV) was investigated by scanning electron microscopy, Z-potential, thermogravimetric and differential thermal analysis, transmission electron microscopy, energy dispersive x-ray diffraction (EDXD) and reverse transcript polymerase chain reaction (RT-PCR). For the first time, to our knowledge, evidence is obtained that conjugation between the nanotubes and the HAV occurs and that it has an (at least a partial) electrostatic character. Since all components of the conjugated systems, nanotubes, coating material and virus are characterized by different peak shapes in the selected q range, it was possible to infer that conjugation occurred. RT-PCR measurements confirmed that the conjugation of the coated nanotubes and HAV occurred and the result was stable. This opens up the prospect of probing the coated nanotubes as intra-cellular carriers in transfection processes of the virus. Further biological applications will concern a possible vaccine especially for non-replicative viruses.
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2009
Giulio Caracciolo, Ruggero Caminiti, Michelle A Digman, Enrico Gratton, Susana Sanchez (2009)  Efficient escape from endosomes determines the superior efficiency of multicomponent lipoplexes.   J Phys Chem B 113: 15. 4995-4997 Apr  
Abstract: Designer multicomponent lipoplexes have recently emerged as especially promising transfection candidates, since they are from 10 to 100 times more efficient than binary complexes usually employed for gene delivery purposes. Here, we show, for the first time, that after internalization binary complexes of lower transfection potency remain in compact perinuclear endosomes, while multicomponent systems have intrinsic endosomal rupture properties that allow plasmid DNA to escape from endosomes with extremely high efficiency. Endosomal rupture results in an extraordinarily homogeneous distribution of unbound plasmid DNA throughout the cytoplasm and in the nucleus.
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Lorenzo Gontrani, Olga Russina, Fabrizio Lo Celso, Ruggero Caminiti, Gary Annat, Alessandro Triolo (2009)  Liquid structure of trihexyltetradecylphosphonium chloride at ambient temperature: an X-ray scattering and simulation study.   J Phys Chem B 113: 27. 9235-9240 Jul  
Abstract: We report on an experimental and simulation study done on a representative room temperature ionic liquid, namely tetradecyltrihexylphosphonium chloride, at ambient conditions. The study was conducted using small and wide angle X-ray scattering and molecular dynamics simulations. Both approaches converge in indicating that this material is characterized by the existence of strong P-Cl interactions (with characteristic distances between 3.5 and 5.0 A) and by the occurrence of nanoscale segregation, despite the symmetric nature of the cation and similarly to other room temperature ionic liquids. A good agreement is found between the structure factor and pair correlation functions obtained from MD simulations and the corresponding experimental observables, thus strongly validating the interaction potential used in the simulations.
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Paolo Ballirano, Ruggero Caminiti (2009)  Kinetics of alpha-PcCu --> beta-PcCu isothermal conversion in air and thermal behavior of beta-PcCu from in situ real-time laboratory parallel-beam X-ray powder diffraction.   J Phys Chem A 113: 27. 7774-7778 Jul  
Abstract: The kinetics of the alpha-PcCu --> beta-PcCu conversion in air has been followed, under isothermal conditions, in situ real-time in the 423-443 K temperature range. Data have been fitted following the JMAK model. The reaction order of the kinetics at 423 K is consistent with a diffusion controlled, deceleratory nucleation rate process for 2D laminar particles, whereas at higher temperatures it is consistent with a phase boundary controlled, deceleratory nucleation rate process for 2D laminar particles. At 423 K, the overall transformation mechanism implies three steps: growth of the alpha-PcCu phase, disordering of adjacent columns of molecules of phthalocyanine, and nucleation and growth of the beta-PcCu phase. The calculated empirical activation energy is of 187 kJ/mol significantly greater than that for the alpha-PcCo --> beta-PcCo conversion. This fact seems to support the reported different structures of alpha-PcCo and alpha-PcCu. Investigation of the thermal behavior of beta-PcCu indicates a strongly anisotropic thermal expansion that follows the alpha(c) >> alpha(a) approximately = alpha(b) trend. Moreover, the beta angle decreases with increasing temperature. Such anisotropy is consistent with the geometry of the very weak N3...H3 hydrogen bond which acts mainly along the c axis.
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Lorenzo Gontrani, Olga Russina, Flaminia Cesare Marincola, Ruggero Caminiti (2009)  An energy dispersive x-ray scattering and molecular dynamics study of liquid dimethyl carbonate.   J Chem Phys 131: 24. Dec  
Abstract: In this work, we report on the first x-ray diffraction study on liquid dimethyl carbonate. Diffraction spectra were collected with an energy-dispersive instrument, whose wide Q-range allows the structure determination of weakly ordered systems (such as liquids). The structural correlation in this liquid ranges up to about 20 A. The observed patterns are interpreted with a structural model derived from classical molecular dynamics simulations. The simulations were run using OPLS force field, only slightly modified to restrain bond distances to the experimental values. The model structure function and radial distribution functions, averaged among the productive trajectory frames, are in very good agreement with the corresponding experimental ones. Molecular dynamics results show that the deviations from C(2v) cis-cis structure, predicted by ab initio calculations and observed by electron diffraction in the gas phase, are small. By analyzing the intra- and intermolecular pair distribution functions, it was possible to assign the peaks of the experimental radial distribution function to specific structural correlations, and to compute the different average intermolecular coordination numbers. The intermolecular methyl-carbonyl oxygen distance is thoroughly discussed to assess the presence of weak C-H...O hydrogen bonds.
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Daniela Pozzi, Giulio Caracciolo, Ruggero Caminiti, Sofia Candeloro De Sanctis, Heinz Amenitsch, Cristina Marchini, Maura Montani, Augusto Amici (2009)  Toward the Rational Design of Lipid Gene Vectors: Shape Coupling between Lipoplex and Anionic Cellular Lipids Controls the Phase Evolution of Lipoplexes and the Efficiency of DNA Release.   ACS Appl Mater Interfaces 1: 10. 2237-2249 Oct  
Abstract: A viewpoint now emerging is that a critical factor in lipid-mediated transfection (lipofection) is the structural evolution of lipoplexes upon interaction with anionic cellular lipids, resulting in DNA release. At the early stages of interaction, we found a universal behavior of lipoplex/anionic lipid (AL) mixtures: the lipoplex structure is slightly perturbed, while the one-dimensional DNA lattice between cationic membranes is largely diluted by ALs. This finding is in excellent agreement with previous suggestions on the mechanism of DNA unbinding from lipoplexes by ALs. Upon further interaction, the propensity of a given lipoplex structure to be solubilized by anionic cellular lipids strongly depends on the shape coupling between lipoplex and ALs. Furthermore, we investigated the effect of the membrane charge density and a general correlation resulted: the higher the membrane charge density of anionic membranes, the higher their ability to solubilize the structure of lipoplexes and to promote DNA release. Lastly, the formation of nonlamellar phases in lipoplex/AL mixtures is regulated by the propensity of anionic cellular lipids to adopt nonlamellar phases. Remarkably, also phase transition rates and DNA release were found to be strongly affected by the shape coupling between lipoplex and ALs. It thus seems likely that the structural and phase evolution of lipoplexes may only be meaningful in the context of specific anionic cellular membranes. These results highlight the phase properties of the carrier lipid/cellular lipid mixtures as a decisive factor for optimal DNA release and suggest a potential strategy for the rational design of efficient cationic lipid carriers.
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2008
Giulio Caracciolo, Daniela Pozzi, Ruggero Caminiti, Cristina Marchini, Maura Montani, Augusto Amici, Heinz Amenitsch (2008)  Enhanced transfection efficiency of multicomponent lipoplexes in the regime of optimal membrane charge density.   J Phys Chem B 112: 36. 11298-11304 Sep  
Abstract: Recently, membrane charge density of lipid membranes, sigma M, has been recognized as a universal parameter that controls the transfection efficiency of complexes made of binary cationic liposomes and DNA (binary lipoplexes). Three distinct regimes, most likely related to interactions between complexes and cells, have also been identified. The purpose of this work was to investigate the transfection efficiency behavior of multicomponent lipoplexes in the regime of optimal membrane charge density (1< sigma M < 2 x 10 (-2) e/A (2)) and compare their performance with that of binary lipoplexes usually employed for gene delivery purposes. We found remarkable differences in transfection efficiency due to lipid composition, with maximum in efficiency being obtained when multicomponent lipoplexes were used to transfect NIH 3T3 cells, while binary lipoplexes were definitely less efficient. These findings suggested that multicomponent systems are especially promising lipoplex candidates. With the aim of providing new insights into the mechanism of transfection, we investigated the structural evolution of lipoplexes when interacting with anionic (cellular) lipids by means of synchrotron small-angle X-ray diffraction (SAXD), while the extent of DNA release upon interaction with anionic lipids was measured by electrophoresis on agarose gels. Interestingly, a clear trend was found that the transfection activity increased with the number of lipid components. These results highlight the compositional properties of carrier lipid/cellular lipid mixtures as decisive factors for transfection and suggest a strategy for the rational design of superior cationic lipid carriers.
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G Mattioli, F Filippone, P Giannozzi, R Caminiti, A Amore Bonapasta (2008)  Theoretical design of coupled organic-inorganic systems.   Phys Rev Lett 101: 12. Sep  
Abstract: Metallo-organic molecules with highly conjugated pi-electrons, like phthalocyanines (Pc's), are widely investigated for usage in electronic and electro-optic devices. However, their weak coupling with semiconductors is an obstacle to technological applications. Here we report a first-principle theoretical study of some fundamental features of the Pc-semiconductor interaction. Our results shed light on the general problem of organic-inorganic coupling and show that an effective coupling can be achieved by a careful choice of the Pc-substrate system and the semiconductor doping. Our results also reveal a universal alignment of the Pc electronic levels to the semiconductor band gap and suggest a general procedure for designing efficiently coupled organic-inorganic systems.
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2007
Roberto Matassa, Claudia Sadun, Lucio D'Ilario, Andrea Martinelli, Ruggero Caminiti (2007)  Supramolecular organization of toluidine blue dye in solid amorphous phases.   J Phys Chem B 111: 8. 1994-1999 Mar  
Abstract: Toluidine blue (TB) dye molecules are intensively utilized for large-area photophysics applications such as carcinoma detection, photoinactivation of bacteria, biosensors, and photovoltaic cells. Understanding the nature of the TB aggregation state becomes an essential point of the research process in order to know the structure-function relationship and to foresee technological applications of this class of metachromatic-dye molecules. However, no structural information on toluidine blue is available in the literature, maybe because of the poor crystalline character of the aggregate. Here, we present the first structural determination of TB organic molecules using the energy dispersive X-ray diffraction technique. The investigation highlights dimeric arrangements of stacked molecules in antiparallel fashion, forming a superstructure of two dimers in a transverse arrangement. The behavior of the TB higher aggregates indicates that these dye molecules, in spite of repulsion due to similar charge (cationic dyes), undergo self-aggregation to form helical conformations.
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Giulio Caracciolo, Cristina Marchini, Daniela Pozzi, Ruggero Caminiti, Heinz Amenitsch, Maura Montani, Augusto Amici (2007)  Structural stability against disintegration by anionic lipids rationalizes the efficiency of cationic liposome/DNA complexes.   Langmuir 23: 8. 4498-4508 Apr  
Abstract: Reported here is the correlation between the transfection efficiency of cationic liposome/DNA complexes (lipoplexes) and the structural evolution that they undergo when interacting with anionic membrane lipids. Multicomponent lipoplexes, incorporating from three to six lipid species simultaneously, presented a much higher transfection efficiency than binary lipoplexes, which are more commonly used for gene-delivery purposes. The discovery that a high transfection efficiency can be achieved by employing multicomponent complexes at a lower-than-ever-before membrane charge density of lipoplexes was of primary significance. Synchrotron small-angle X-ray diffraction (SAXD) experiments showed that anionic liposomes made of dioleoylphosphatidylglycerol (DOPG) disintegrated the lamellar phase of lipoplexes. DNA unbinding was measured by electrophoresis on agarose gels. Most importantly, structural changes induced by anionic lipids strictly depended on the lipid composition of lipoplexes. We found evidence of the existence of three different regimes of stability related to the interaction between complexes and anionic membranes. Both unstable (with low membrane charge density, sigmaM) and highly stable lipoplexes (with high sigmaM) exhibited low transfection efficiency whereas highly efficient multicomponent lipoplexes exhibited an "optimal stability". This intermediate regime reflects a compromise between two opposing constraints: protection of DNA in the cytosol and endosomal escape. Here we advance the concept that structural stability, upon interaction with cellular anionic lipids, is a key factor governing the transfection efficiency of lipoplexes. Possible molecular mechanisms underlying experimental observations are also discussed.
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Giulio Caracciolo, Daniela Pozzi, Heinz Amenitsch, Ruggero Caminiti (2007)  Interaction of lipoplexes with anionic lipids resulting in DNA release is a two-stage process.   Langmuir 23: 17. 8713-8717 Aug  
Abstract: We propose a mechanism for DNA release from lipoplexes in cells that accounts for various observations of lipoplex-anionic lipid interactions. We examined the structural evolution of lipoplexes upon interaction with cellular lipids by synchrotron small-angle X-ray diffraction (SAXD), and the extent of DNA release from lipoplexes was determined by gel electrophoresis. We find that the interaction of lipoplexes with anionic cellular lipids is a two-stage process. In the first step, anionic lipids laterally diffuse into the complex and neutralize the cationic lipids. As a result, the membrane charge density of lipoplexes decreases and interactions between cationic lipids and DNA become weaker, but DNA is extremely poorly released. Only after the cationic charge of lipoplex membranes is completely neutralized by anionic lipids does DNA starts to be released significantly.
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Fabio Ramondo, Luigi Bencivenni, Ruggero Caminiti, Andrea Pieretti, Lorenzo Gontrani (2007)  Dimerisation of urea in water solution: a quantum mechanical investigation.   Phys Chem Chem Phys 9: 18. 2206-2215 Jun  
Abstract: The effect of water solvation on the structure and stability of cyclic dimers of urea has been investigated with the aid of density functional theory at the B3LYP/6-311++G** level. Several hydration models have been discussed. Specific solvent effects have been simulated through single and multiple water-urea interactions involving all the hydration sites of urea. The bulk solvent effects have been estimated through polarised continuum models. Under all the hydration patterns cyclic dimers continue to be stable structures although the solvent weakens the urea-urea interaction. Single and multiple specific urea-water interactions are competitive with urea dimerisation. The anticooperative nature of the two intermolecular interactions is largely due to the changes on sigma- and pi-electron density of urea caused by hydrogen bonding with water. The stability of the dimer is however, lost within a few ps when the hydrated dimer is described by a quantum mechanical molecular dynamics approach (ADMP). The cyclic dimer evolves towards structures where urea molecules are linked not more directly but through water molecules which have a bridge function.
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Giulio Caracciolo, Daniela Pozzi, Ruggero Caminiti, Cristina Marchini, Maura Montani, Augusto Amici, Heinz Amenitsch (2007)  Transfection efficiency boost by designer multicomponent lipoplexes.   Biochim Biophys Acta 1768: 9. 2280-2292 Sep  
Abstract: Cationic liposome-DNA complexes (lipoplexes) have emerged as leading nonviral gene carriers in worldwide gene therapy clinical trials. Arriving at therapeutic dosages requires the full understanding of the mechanism of transfection. We investigated the correlation between structural evolution of multicomponent lipoplexes when interacting with cellular lipids, the extent of DNA release and the efficiency in transfecting mouse fibroblast (NIH 3T3), ovarian (CHO) and tumoral myofibroblast-like (A17) cell lines. We show, for the first time, that the transfection pattern increases monotonically with the number of lipid components and further demonstrate by means of synchrotron small angle X- ray scattering (SAXS) that structural changes of lipoplexes induced by cellular lipids correlate with the transfection efficiency. Specifically, inefficient lipoplexes either fused too rapidly upon interaction with anionic lipids or, alternatively, are found to be extremely resistant to solubilization. The most efficient lipoplex formulations exhibited an intermediate behaviour. The extent of DNA unbinding (measured by electrophoresis on agarose gel) correlates with structural evolution of the lipoplexes but DNA-release does not scale with the extent of transfection. The general meaning of our results is of broad interest in the field of non-viral gene delivery: rational adjusting of lipoplex composition to generate the proper interaction between lipoplexes and cellular lipids may be the most appropriate strategy in optimizing synthetic lipid transfection agents.
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Eugenio Caponetti, Ruggero Caminiti, Delia Chillura Martino, Maria Luisa Saladino (2007)  Energy dispersive X-ray diffraction potentiality in the field of cultural heritage: simultaneous structural and elemental analysis of various artefacts.   Ann Chim 97: 7. 473-490 Jul  
Abstract: The applicability of an Energy Dispersive X-ray Diffractometer to some technical questions in the field of Cultural Heritage is presented. This diffractometer, equipped with a white source, has been utilized for the structural and elemental analysis of some items having different nature. Given its design, the instrument allows to collect data from samples as big as a book or a little more. Samples, without collection of any portion and without any preliminary preparation, have been placed in the instrument and spectra have been collected in a wide energy range that contains X-ray fluorescence and diffraction features. In all cases, data acquired in air and in a non destructive way were reliable and their collection was fast. Fluorescence and X-ray diffraction information, when possible, have been compared with those obtained by XRF micro-analysis and by an Angle Dispersive X-ray Diffractometer equipped with a Cu X-ray source. By using the last two techniques, data have been collected from small areas of the samples.
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Giulio Caracciolo, Daniela Pozzi, Giovanna Mancini, Ruggero Caminiti (2007)  Role of the spacer stereochemistry on the structure of solid-supported gemini surfactants aggregates.   Langmuir 23: 20. 10040-10043 Sep  
Abstract: Energy dispersive X-ray diffraction was applied to investigate the role of the spacer stereochemistry on the structure of the solid supported aggregates of three stereoisomeric cationic gemini surfactants, 2,3-dimethoxy-1,4-bis-(N-hexadecyl-N,N-dimethylammonio)butane dibromide. Solid-supported Gemini surfactant aggregates self-assemble into highly interdigitated multibilayer stacks. Structural properties, such as the bilayer thickness, the headgroup size, the thickness of the hydrophobic core, and the size of the interbilayer water region, were derived from electron density profiles. Results show that the stereochemistry of the spacer controls the structural properties of the solid-supported interfacial aggregates.
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2006
G Caracciolo, A Martelli, G Boumis, A Bellelli, R Caminiti, A Congiu-Castellano, G Amiconi (2006)  Conformational changes of bovine beta-trypsin and trypsinogen induced by divalent ions: an energy-dispersive X-ray diffraction and functional study.   Arch Biochem Biophys 449: 1-2. 157-163 May  
Abstract: The radius of gyration (R(g)) of bovine trypsinogen and beta-trypsin was measured by an energy-dispersive X-ray technique as a function of Ca(2+) or SO(4)(2-) concentration; these results have been supplemented with measurements of association equilibrium constants of Ca(2+) to its binding site(s) on both serine proteases and some of their adducts (with an effector and/or an inhibitor). As a whole, all information reported in the present work demonstrates that: (i) the strains exerted by different ions on these proteases produce diverse structural modifications; and (ii) at least in the case of Ca(2+), the changes in R(g) can be ascribed to the direct interaction of the binding site(s) on the protein matrix with the cation.
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Giulio Caracciolo, Daniela Pozzi, Heinz Amenitsch, Ruggero Caminiti (2006)  One-dimensional thermotropic dilatation area of lipid headgroups within lamellar lipid/DNA complexes.   Langmuir 22: 9. 4267-4273 Apr  
Abstract: Using simultaneous synchrotron small- and wide-angle X-ray diffraction (SWAXD), we investigated the thermotropic behavior of a cationic lipid mixture of DOTAP-DOPC (1,2-dioleoyl-3-trimethylammonium-propane-dioleoylphosphatidylcholine) liposomes complexed with calf thymus DNA. The DOTAP-DOPC/DNA complex reacts to temperature change by a bilayer compression normal to its surface and an expansion of the DNA in the plane of the rod lattice. By applying two independent recently developed models, we show here for the first time that the thermotropic dilatation area of lipid headgroups within the complexes is not isotropic but occurs parallel to the 1D DNA lattice (i.e., along the direction perpendicular to the DNA axis). Our results shed light on the role of spatial dimensionality in the DNA packing density within lamellar lipoplexes and provide experimental evidence that the interaction between DNA molecules confined between lipid bilayers can be regarded as a 1D problem.
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Giulio Caracciolo, Daniela Pozzi, Ruggero Caminiti, Heinz Amenitsch (2006)  Two-dimensional lipid mixing entropy regulates the formation of multicomponent lipoplexes.   J Phys Chem B 110: 42. 20829-20835 Oct  
Abstract: The mechanism of formation of multicomponent lipoplexes was investigated by means of synchrotron Small-Angle X-ray Diffraction (SAXD). Mixed lipid dispersions were prepared by mixing different populations of binary cationic liposomes. When adding DNA to mixed lipid dispersions, multicomponent lipoplexes spontaneously formed exhibiting structural properties, i.e., membrane thickness, surface charge density, and one-dimensional DNA packing density, intermediate between those of binary lipoplexes. These results suggested that DNA lets liposomes come into contact and fuse and that a complete lipid mixing at the molecular level occurs. The equilibrium structure of multicomponent lipoplexes was found to be unique and did not depend on the number and kind of populations composing lipid dispersion but only on the lipid species involved and on their relative molar ratio. According to recent theoretical models we identified two-dimensional lipid mixing entropy as the key factor regulating the existence of only multicomponent lipoplexes with ideally mixed lipid species.
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Michela Pisani, Paolo Bruni, Giulio Caracciolo, Ruggero Caminiti, Oriano Francescangeli (2006)  Structure and phase behavior of self-assembled DPPC-DNA-metal cation complexes.   J Phys Chem B 110: 26. 13203-13211 Jul  
Abstract: Multilamellar liposomes of dipalmitoylphosphatidylcholine (DPPC) in solution with DNA and bivalent metal cations (Ca2+, Mn2+, Mg2+) self-assemble into a ternary DPPC-DNA-Me2+ complex. The supramolecular structure of the complex consists of an ordered multilamellar assembly where hydrated DNA helices are sandwiched between the lipid bilayers and the metal cations bind the phosphate groups of DNA to the lipid polar heads. In the range of explored incubation times, the complex coexists with the uncomplexed DPPC over the whole temperature range investigated (20-55 degrees C). Accordingly, two distinct coexisting lamellar phases are observed, one corresponding to the ternary complex and the other to the uncomplexed lipid. The structure and thermotropic phase behavior of both of these have been investigated by means of synchrotron X-ray diffraction, and the relevant structural data are deduced from experimental electron density profiles. While the uncomplexed lipid exhibits the same phase behavior as pure DPPC, that is, L beta'-P beta'-L alpha, the thermotropic behavior of the bound lipid in the complex is partially altered. This is manifested as an increase in the main transition temperature and the disappearance of the ripple phase leading to the single -phase transition. The role of the different metal cations in promoting and stabilizing the DNA condensation into the ternary complex is also discussed.
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2005
Giulio Caracciolo, Stefano Piotto, Cecilia Bombelli, Ruggero Caminiti, Giovanna Mancini (2005)  Segregation and phase transition in mixed lipid films.   Langmuir 21: 20. 9137-9142 Sep  
Abstract: Energy dispersion X-ray diffraction (EDXD) was applied to investigate the structure of partly dehydrated mixed films formed by the phospholipid dimyristoyl phosphatidylcoline (DMPC) and any of the three diastereomers of the dicationic gemini surfactant (2S,3S)-2,3-dimethoxy-1,4-bis(N-hexadecyl-N,N-dimethylammonium) butane dibromide. As the surfactant to lipid molar ratio (R(S/L)) increases, the gemini monotonically solubilizes the lipid bilayer promoting the formation of a cubic phase of space group Pmn segregating from the residual lamellar phase of the lipid. Finally, at R(S/)(L) = 1, the phase transition is complete. The mixed film at the highest surfactant to lipid molar ratio (R(S/L) = 2.3) was hydrated by a vapor saturated atmosphere. At full hydration, a cubic to lamellar phase transition occurs. Coarse grain dynamic investigations, carried out as a function of both the surfactant to lipid molar ratio and the number of water molecules for amphiphile unit, allowed us to elucidate the structure of the emerging cubic phase and the hydration-induced structural pathway of the cubic to lamellar phase transition observed by EDXD.
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Giulio Caracciolo, Daniela Pozzi, Heinz Amenitsch, Ruggero Caminiti (2005)  Multicomponent cationic lipid-DNA complex formation: role of lipid mixing.   Langmuir 21: 25. 11582-11587 Dec  
Abstract: Multicomponent cationic lipid-DNA complexes (lipoplexes) were prepared by adding linear DNA to mixed lipid dispersions containing two populations of binary cationic liposomes and characterized by means of small angle X-ray scattering (SAXS). Four kinds of cationic liposomes were used. The first binary lipid mixture was made of the cationic lipid (3'[N-(N',N'-dimethylaminoethane)-carbamoyl]cholesterol (DC-Chol) and the neutral helper lipid dioleoylphosphocholine (DOPC) (DC-Chol/DOPC liposomes), the second one of the cationic 1,2-dioleoyl-3-trimethylammonium-propane (DOTAP) and the neutral dioleoylphosphatidylethanolamine (DOPE) (DOTAP/DOPE liposomes), the third one of DC-Chol and DOPE (DC-Chol/DOPE liposomes), and the fourth one of DOTAP and DOPC (DOTAP/DOPC liposomes). Upon DNA-induced fusion of liposomes, large lipid mixing at the molecular level occurs. As a result, highly organized mixed lipoplexes spontaneously form with membrane properties intermediate between those of starting liposomes. By varying the composition of lipid dispersions, different DNA packing density regimes can also be achieved. Furthermore, occurring lipid mixing was found to induce hexagonal to lamellar phase transition in DOTAP/DOPE membranes. Molecular mechanisms underlying experimental findings are discussed.
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2003
Giulio Caracciolo, Marco De Spirito, Agostina Congiu Castellano, Daniela Pozzi, Gino Amiconi, Angela De Pascalis, Ruggero Caminiti, Giuseppe Arcovito (2003)  Protofibrils within fibrin fibres are packed together in a regular array.   Thromb Haemost 89: 4. 632-636 Apr  
Abstract: The inner structure of fibrin fibres grown from fibrinogen solution activated by human alpha-thrombin was investigated by means of an Energy Dispersive X-ray Diffraction technique. The experiments show evidence for the well-characterized 22.5 nm repeat distance, which indicates the high order of protofibril arrangement in the longitudinal direction of fibres. The diffraction pattern also manifested a further pronounced peak at 18.1 nm (and its second order reflection at 18.1/ radical 2) demonstrating the existence in fibrin of a high degree of lateral order. The reported results directly confirm, on unperturbed wet samples, that protofibrils closely associate giving rise to a crystalline axial and equatorial packing according to the conclusions of the multibundle model.
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G Caracciolo, D Pozzi, R Caminiti, A Congiu Castellano (2003)  Structural characterization of a new lipid/DNA complex showing a selective transfection efficiency in ovarian cancer cells.   Eur Phys J E Soft Matter 10: 4. 331-336 Apr  
Abstract: We investigated, for the first time, by using Energy Dispersive X-ray Diffraction, the structure of a new ternary cationic liposome formulated with dioleoyl trimethylammonium propane (DOTAP), 1,2-dioleoyl-3-phosphatidylethanolamine (DOPE) and cholesterol (Chol) (DDC) which has been recently found to have a selective high gene transfer ability in ovarian cancer cells. Our structural results provide a further experimental support to the widely accepted statement that there is not a simple and direct correlation between structure and transfection efficiency and that the factors controlling cationic lipid/DNA (CL-DNA) complexes-mediated gene transfer depend not only on the formulations of the cationic liposomes and their thermodynamic phase, but also significantly on the cell properties.
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2002
Raffaele Saladino, Veronica Neri, Anna Rita Pelliccia, Ruggero Caminiti, Claudia Sadun (2002)  Preparation and structural characterization of polymer-supported methylrhenium trioxide systems as efficient and selective catalysts for the epoxidation of olefins.   J Org Chem 67: 4. 1323-1332 Feb  
Abstract: Novel heterogeneous compounds of methylrhenium trioxide (MTO) were prepared with poly(4-vinylpyridine) and polystyrene as polymeric supports. The wide-angle X-ray diffraction (WAXS.) analysis, performed by the application of the difference method, showed, in a representative case of the poly(4-vinylpyridine)/MTO derivatives, a slightly distorted octahedral conformation on the metal's primary coordination sphere. The Re-O and Re-C bond distances were not influenced by the polymeric nature of the ligand, while the Re-N bond distance was abnormally shorter than those previously observed for homogeneous MTO/L(n) complexes, showing a strong coordination of the rhenium atom to the support. A set of scanning electron microscopy (SEM) photographs showing the morphology of the surface of particles of poly(4-vinylpyridine)/MTO and polystyrene/MTO systems are reported. The reticulation grade of the polymer was a crucial factor for the morphology of the particles surface. Poly(4-vinylpyridine) 2% cross-linked systems were characterized by particles with very irregular shape and surface. Poly(4-vinylpyridine) 25% cross-linked systems showed particles with regular spherical shape, which morphology was similar to microcapsules obtained with polystyrene. All novel MTO compounds were efficient and selective heterogeneous catalysts for the epoxidation of olefins using environmentally friendly H2O2 as oxygen atom donor. The catalyst activity was maintained for at least five recycling experiments.
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2001
D Atzei, T Ferri, C Sadun, P Sangiorgio, R Caminiti (2001)  Structural characterization of complexes between iminodiacetate blocked on styrene-divinylbenzene matrix (Chelex 100 resin) and Fe(III), Cr(III), and Zn(II) in solid phase by energy-dispersive X-ray diffraction.   J Am Chem Soc 123: 11. 2552-2558 Mar  
Abstract: Local structure of Fe(III), Cr(III), and Zn(II) cations has been determined on the amorphous sample by means of the difference method used for liquid systems. We recorded energy-dispersive X-ray diffraction spectra of a chelating resin (Chelex 100), containing paired iminodiacetate ions coupled to a styrene-divinylbenzene support, in several ionic forms. Coordination geometry of Fe(III), Cr(III), and Zn(II) metal cations with Chelex 100 resin ligand sites, and conformation of the ligand groups have been determined.
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G Caracciolo, G Amiconi, L Bencivenni, G Boumis, R Caminiti, E Finocchiaro, B Maras, C Paolinelli, A Congiu Castellano (2001)  Conformational study of proteins by SAXS and EDXD: the case of trypsin and trypsinogen.   Eur Biophys J 30: 3. 163-170 Jul  
Abstract: The radius of gyration (Rg) of bovine trypsinogen and beta-trypsin was measured by an energy-dispersive X-ray technique (EDXD) and by small-angle X-ray scattering (SAXS), under different solvent conditions. Both techniques gave superimposable results. The experimental evidence demonstrated that: (1) no structural modifications and/or damage occurred during the data acquisition by EDXD; (2) at pH 4 the active enzyme has one class of chloride binding sites in common with the zymogen, whereas the latter protease shows an additional class able to reverse the effects on Rg induced by chloride at low concentration; and (3) the pH profile of the Rg of both proteases does not resemble at all the pH effect on beta-trypsin activity, a result in line with the finding that the electrical potentials induced by surface charge are small in absolute magnitude and produce no gradient across the active site.
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M E Amato, R Caminiti, G A Carriedo, F J Garcia-Alonso, J L GarcĂ­a-Alvarez, G M Lombardo, G C Pappalardo (2001)  Structural features and molecular assembly of amorphous phosphazenic materials in the bulk--combined theoretical and experimental techniques: Tris-(2,2'-dioxy-1,1'-binaphthyl)cyclotriphosphazen.   Chemistry 7: 7. 1486-1494 Apr  
Abstract: The structure and the assembly of tris-(2,2'-dioxy-binaphthyl)cyclotriphosphazene [(+)-[NP3(O2C20H12)3], DBNP, in the solid amorphous state was studied using molecular dynamics (MD) including ad hoc quantum mechanically derived force field (FF) parameters, in combination with the energy dispersive X-ray diffraction (EDXD) technique. The atom-atom radial distribution function (RDF) curve obtained through the EDXD experiment revealed low intensity peaks not attributable to the intramolecular distances of the single molecule, but clearly featuring a low energy state of long-distance three-dimensional assembly. The radial distribution functions (RDF) were calculated for various models of DBNP submitted to theoretical MD simulations. Based on the comparison of theoretically calculated RDFs and those obtained from the EDXD experiment, the predominant structural motif of the material in the bulk was found to have DBNP molecules laid one upon the other to form tubular nanostructures. These contain eight DBNP units each (length ca. 46 A) with two and three of these units aligned in parallel and held together. The material can be represented as a bulk of tubular snake-like chains undergoing distortions with a step of eight DBNP units. The bending angles, that vary randomly, attain limited values sufficient to induce disorder and thus nonperiodic structure. The present application of MD simulations combined with EDXD data appear to be a general approach to solve for the first time otherwise intractable issues concerning structural features and assembly of molecular materials in the bulk.
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1998
Ruggero Caminiti, Maria Pia Donzello, Claudio Ercolani, Claudia Sadun (1998)  Dimeric Osmium Phthalocyanine Organized in Discrete Columnarly Stacked Assemblies: Structure, Magnetism, and Electrical Conductivity Properties.   Inorg Chem 37: 17. 4210-4213 Aug  
Abstract: Solid pure osmium phthalocyanine, as obtained from its adduct [PcOs(py)(2)], is an air-stable solid amorphous material. Its structure has been examined by the wide-angle X-ray scattering (WAXS) technique. Experimental data are best fitted by assuming the molecule to consist of a dimeric unit, (PcOs)(2), held together by a direct metal-metal linkage. The short Os-Os distance (2.38(1) Ã…) is consistent with the presence of a double bond between the two Os(II) atoms. Each Pc skeleton has a domed conformation with displacement of the respective Os atom from the plane of the four coordinating nitrogen atoms (0.40 Ã…) toward the other Os atom. The solid-state structure consists of disordered couples of parallel chains of (PcOs)(2). On average, six dimeric units are aligned along the stacking direction within each chain. The relative orientation of the two intradimer Pc units is 30 degrees, eclipsing occurring for the interdimer adjacent Pc units along the chain. Magnetic susceptibility measurements in the temperature range 5-300 K indicate a strong spin-spin coupling for the two metal centers in the dimer and suggest an electronic energy level sequence sigma(2)pi(4)delta(2)delta(2)pi(2) and a nonmagnetic ground state for the complex. Room-temperature electrical conductivity measurements show a sigma(RT) value of 1 x 10(-)(5) Omega(-)(1) cm(-)(1).
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